org.bdgenomics.adam.rdd.variation

# VCFInFormatter

#### case class VCFInFormatter(sequences: SequenceDictionary, samples: Seq[String]) extends InFormatter[VariantContext, VariantContextRDD, VCFInFormatter] with Product with Serializable

Linear Supertypes
Product, Equals, InFormatter[VariantContext, VariantContextRDD, VCFInFormatter], Serializable, Serializable, AnyRef, Any
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1. VCFInFormatter
2. Product
3. Equals
4. InFormatter
5. Serializable
6. Serializable
7. AnyRef
8. Any

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### Instance Constructors

1. #### new VCFInFormatter(sequences: SequenceDictionary, samples: Seq[String])

### Value Members

1. #### final def !=(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

2. #### final def !=(arg0: Any): Boolean

   Definition Classes
     Any

3. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

4. #### final def ==(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

5. #### final def ==(arg0: Any): Boolean

   Definition Classes
     Any

6. #### final def asInstanceOf[T0]: T0

   Definition Classes
     Any

7. #### def clone(): AnyRef

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... )

8. #### val companion: VCFInFormatter.type

   Attributes
     protected
   Definition Classes
     VCFInFormatter → InFormatter

9. #### val converter: VariantContextConverter

10. #### final def eq(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

11. #### def finalize(): Unit

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )

12. #### final def getClass(): Class[_]

    Definition Classes
      AnyRef → Any

13. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

14. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

15. #### final def notify(): Unit

    Definition Classes
      AnyRef

16. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

17. #### val samples: Seq[String]

18. #### val sequences: SequenceDictionary

19. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

20. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

21. #### final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

22. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

23. #### def write(os: OutputStream, iter: Iterator[VariantContext]): Unit

    Writes variant contexts to an output stream in VCF format.

    Writes variant contexts to an output stream in VCF format.

    os

      An OutputStream connected to a process we are piping to.

    iter

      An iterator of records to write.

    Definition Classes
      VCFInFormatter → InFormatter

### Inherited from Product

### Inherited from Equals

### Inherited from InFormatter[VariantContext, VariantContextRDD, VCFInFormatter]

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

### Ungrouped