org.bdgenomics.adam.rdd.variation

# ADAMHeaderlessVCFOutputFormat

#### class ADAMHeaderlessVCFOutputFormat[K] extends KeyIgnoringVCFOutputFormat[K] with Serializable

Wrapper for Hadoop-BAM to work around requirement for no-args constructor.

K

Linear Supertypes
Serializable, Serializable, KeyIgnoringVCFOutputFormat[K], VCFOutputFormat[K], FileOutputFormat[K, VariantContextWritable], OutputFormat[K, VariantContextWritable], AnyRef, Any
Ordering

1. Alphabetic
2. By inheritance

Inherited

1. ADAMHeaderlessVCFOutputFormat
2. Serializable
3. Serializable
4. KeyIgnoringVCFOutputFormat
5. VCFOutputFormat
6. FileOutputFormat
7. OutputFormat
8. AnyRef
9. Any

1. Hide All
2. Show all

Learn more about member selection
Visibility

1. Public
2. All

### Instance Constructors

1. #### new ADAMHeaderlessVCFOutputFormat()

### Value Members

1. #### final def !=(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

2. #### final def !=(arg0: Any): Boolean

   Definition Classes
     Any

3. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

4. #### final def ==(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

5. #### final def ==(arg0: Any): Boolean

   Definition Classes
     Any

6. #### final def asInstanceOf[T0]: T0

   Definition Classes
     Any

7. #### def checkOutputSpecs(arg0: JobContext): Unit

   Definition Classes
     FileOutputFormat → OutputFormat
   Annotations
     @throws( classOf[java.io.IOException] ) @throws( ... )

8. #### def clone(): AnyRef

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... )

9. #### final def eq(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

10. #### def equals(arg0: Any): Boolean

    Definition Classes
      AnyRef → Any

11. #### def finalize(): Unit

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )

12. #### final def getClass(): Class[_]

    Definition Classes
      AnyRef → Any

13. #### def getDefaultWorkFile(arg0: TaskAttemptContext, arg1: String): Path

    Definition Classes
      FileOutputFormat
    Annotations
      @throws( classOf[java.io.IOException] )

14. #### def getHeader(): VCFHeader

    Definition Classes
      KeyIgnoringVCFOutputFormat

15. #### def getOutputCommitter(arg0: TaskAttemptContext): OutputCommitter

    Definition Classes
      FileOutputFormat → OutputFormat
    Annotations
      @throws( classOf[java.io.IOException] )

16. #### def getRecordWriter(context: TaskAttemptContext): RecordWriter[K, VariantContextWritable]

    Definition Classes
      ADAMHeaderlessVCFOutputFormat → KeyIgnoringVCFOutputFormat → FileOutputFormat → OutputFormat

17. #### def getRecordWriter(arg0: TaskAttemptContext, arg1: Path): RecordWriter[K, VariantContextWritable]

    Definition Classes
      KeyIgnoringVCFOutputFormat
    Annotations
      @throws( classOf[java.io.IOException] )

18. #### def hashCode(): Int

    Definition Classes
      AnyRef → Any

19. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

20. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

21. #### final def notify(): Unit

    Definition Classes
      AnyRef

22. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

23. #### def readHeaderFrom(arg0: SeekableStream): Unit

    Definition Classes
      KeyIgnoringVCFOutputFormat
    Annotations
      @throws( classOf[java.io.IOException] )

24. #### def readHeaderFrom(arg0: Path, arg1: FileSystem): Unit

    Definition Classes
      KeyIgnoringVCFOutputFormat
    Annotations
      @throws( classOf[java.io.IOException] )

25. #### def setHeader(arg0: VCFHeader): Unit

    Definition Classes
      KeyIgnoringVCFOutputFormat

26. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

27. #### def toString(): String

    Definition Classes
      AnyRef → Any

28. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

29. #### final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

30. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

### Inherited from Serializable

### Inherited from KeyIgnoringVCFOutputFormat[K]

### Inherited from VCFOutputFormat[K]

### Inherited from FileOutputFormat[K, VariantContextWritable]

### Inherited from OutputFormat[K, VariantContextWritable]

### Inherited from AnyRef

### Inherited from Any

### Ungrouped