org.bdgenomics.adam.rdd

# RegionJoin

#### trait RegionJoin[T, U, RT, RU] extends AnyRef

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Known Subclasses
BroadcastRegionJoin, FullOuterShuffleRegionJoin, InnerBroadcastRegionJoin, InnerShuffleRegionJoin, InnerShuffleRegionJoinAndGroupByLeft, LeftOuterShuffleRegionJoin, RightOuterBroadcastRegionJoin, RightOuterShuffleRegionJoin, RightOuterShuffleRegionJoinAndGroupByLeft, ShuffleRegionJoin
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### Abstract Value Members

1. #### abstract def partitionAndJoin(baseRDD: RDD[(ReferenceRegion, T)], joinedRDD: RDD[(ReferenceRegion, U)])(implicit tManifest: ClassTag[T], uManifest: ClassTag[U]): RDD[(RT, RU)]

   Performs a region join between two RDDs.

   Performs a region join between two RDDs.

   baseRDD

     The 'left' side of the join

   joinedRDD

     The 'right' side of the join

   tManifest

     implicit type of baseRDD

   uManifest

     implicit type of joinedRDD

   returns

     An RDD of pairs (x, y), where x is from baseRDD, y is from joinedRDD, and the region corresponding to x overlaps the region corresponding to y.

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