InFormatter
rdd
InFormatterCompanion
rdd
IncorrectMDTagException
read
IndexedFastaFile
util
InnerShuffleRegionJoin
rdd
InnerShuffleRegionJoinAndGroupByLeft
rdd
InnerTreeRegionJoin
rdd
InnerTreeRegionJoinAndGroupByRight
rdd
InputStreamWithDecoder
serialization
InstrumentedADAMBAMOutputFormat
read
InstrumentedADAMBAMOutputFormatHeaderLess
read
InstrumentedADAMCRAMOutputFormat
read
InstrumentedADAMCRAMOutputFormatHeaderLess
read
InstrumentedADAMSAMOutputFormat
read
InstrumentedADAMSAMOutputFormatHeaderLess
read
Integer
TagType
InterleavedFASTQInFormatter
fragment
InterleavedFastqInputFormat
io
in
AvroSerializer
indexRecordStart
TwoBitFile
inferredInsertSize
AlignmentRecordField
instrument
FragmentField
instrumentation
adam
intersection
ReferenceRegion
invert
GenomeBins
io
adam
isAdjacent
ReferenceRegion
isCompatibleWith
SequenceDictionary
isDeletion
RichVariant
isEmpty
SequenceDictionary
isInsertion
RichVariant
isMasked
SnpTable
isMatch
MdTag
isMismatchAtReadOffset
RichAlignmentRecord
isMismatchAtReferencePosition
RichAlignmentRecord
isMultipleNucleotideVariant
RichVariant
isSingleNucleotideVariant
RichVariant