org.bdgenomics.adam.converters

# DefaultHeaderLines

#### object DefaultHeaderLines

Default set of VCF header lines for INFO and GT format fields supported in ADAM.

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### Value Members

1. #### final def !=(arg0: AnyRef): Boolean

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2. #### final def !=(arg0: Any): Boolean

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3. #### final def ##(): Int

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4. #### final def ==(arg0: AnyRef): Boolean

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5. #### final def ==(arg0: Any): Boolean

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6. #### lazy val allHeaderLines: Seq[VCFCompoundHeaderLine]

   Default set of VCF header lines for INFO and GT format fields supported in ADAM.

7. #### lazy val alleleCount: VCFInfoHeaderLine

8. #### lazy val alleleFrequency: VCFInfoHeaderLine

9. #### lazy val allelicDepth: VCFFormatHeaderLine

10. #### lazy val ancestralAllele: VCFInfoHeaderLine

11. #### final def asInstanceOf[T0]: T0

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12. #### lazy val cigar: VCFInfoHeaderLine

13. #### def clone(): AnyRef

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14. #### lazy val dbSnp: VCFInfoHeaderLine

15. #### final def eq(arg0: AnyRef): Boolean

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16. #### def equals(arg0: Any): Boolean

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17. #### def finalize(): Unit

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18. #### lazy val fisherStrand: VCFFormatHeaderLine

19. #### lazy val formatHeaderLines: Seq[VCFFormatHeaderLine]

    Default set of VCF header lines for GT format fields supported in ADAM.

20. #### lazy val formatReadDepth: VCFFormatHeaderLine

21. #### lazy val forwardReadDepth: VCFInfoHeaderLine

22. #### lazy val genotype: VCFFormatHeaderLine

23. #### lazy val genotypeFilter: VCFFormatHeaderLine

24. #### lazy val genotypeQuality: VCFFormatHeaderLine

25. #### final def getClass(): Class[_]

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26. #### lazy val hapMap2: VCFInfoHeaderLine

27. #### lazy val hapMap3: VCFInfoHeaderLine

28. #### def hashCode(): Int

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29. #### lazy val infoHeaderLines: Seq[VCFInfoHeaderLine]

    Default set of VCF header lines for INFO fields supported in ADAM.

30. #### final def isInstanceOf[T0]: Boolean

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31. #### lazy val mapq0: VCFFormatHeaderLine

32. #### lazy val minReadDepth: VCFFormatHeaderLine

33. #### final def ne(arg0: AnyRef): Boolean

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34. #### final def notify(): Unit

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35. #### final def notifyAll(): Unit

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36. #### lazy val phaseQuality: VCFFormatHeaderLine

37. #### lazy val phaseSetId: VCFFormatHeaderLine

38. #### lazy val phredLikelihoods: VCFFormatHeaderLine

39. #### lazy val readDepth: VCFInfoHeaderLine

40. #### lazy val reverseReadDepth: VCFInfoHeaderLine

41. #### lazy val rmsMapq: VCFFormatHeaderLine

42. #### lazy val somatic: VCFInfoHeaderLine

43. #### lazy val strandBiasComponents: VCFFormatHeaderLine

44. #### final def synchronized[T0](arg0: ⇒ T0): T0

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45. #### lazy val thousandGenomes: VCFInfoHeaderLine

46. #### def toString(): String

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47. #### lazy val transcriptEffects: VCFInfoHeaderLine

48. #### lazy val validated: VCFInfoHeaderLine

49. #### final def wait(): Unit

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50. #### final def wait(arg0: Long, arg1: Int): Unit

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51. #### final def wait(arg0: Long): Unit

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