org.bdgenomics.adam.rdd

# fragment

#### package fragment

Visibility

1. Public
2. All

### Type Members

1. #### case class DatasetBoundFragmentRDD extends FragmentRDD with Product with Serializable

2. #### sealed abstract class FragmentRDD extends AvroRecordGroupGenomicRDD[Fragment, Fragment, FragmentRDD]

3. #### class InterleavedFASTQInFormatter extends InFormatter[Fragment, FragmentRDD, InterleavedFASTQInFormatter] with Logging

4. #### case class ParquetUnboundFragmentRDD extends FragmentRDD with Product with Serializable

5. #### case class RDDBoundFragmentRDD extends FragmentRDD with Product with Serializable

6. #### class Tab5InFormatter extends InFormatter[Fragment, FragmentRDD, Tab5InFormatter] with Logging

7. #### class Tab6InFormatter extends InFormatter[Fragment, FragmentRDD, Tab6InFormatter] with Logging

### Value Members

1. #### object FragmentRDD extends Serializable

   Helper singleton object for building FragmentRDDs.

2. #### object InterleavedFASTQInFormatter extends InFormatterCompanion[Fragment, FragmentRDD, InterleavedFASTQInFormatter] with Serializable

   InFormatter companion that creates an InFormatter that writes interleaved FASTQ.

3. #### object Tab5InFormatter extends InFormatterCompanion[Fragment, FragmentRDD, Tab5InFormatter] with Serializable

   InFormatter companion that creates an InFormatter that writes Bowtie tab5 format.

4. #### object Tab6InFormatter extends InFormatterCompanion[Fragment, FragmentRDD, Tab6InFormatter] with Serializable

   InFormatter companion that creates an InFormatter that writes Bowtie tab6 format.

### Ungrouped