org.bdgenomics.adam.projections

# VariantCallingAnnotationsField

#### class VariantCallingAnnotationsField extends FieldEnumeration

Linear Supertypes
FieldEnumeration, Enumeration, Serializable, Serializable, AnyRef, Any
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Inherited

1. VariantCallingAnnotationsField
2. FieldEnumeration
3. Enumeration
4. Serializable
5. Serializable
6. AnyRef
7. Any

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### Instance Constructors

1. #### new VariantCallingAnnotationsField()

### Type Members

1. #### class SchemaVal extends Val with FieldValue

   Definition Classes
     FieldEnumeration

2. #### class Val extends Value with Serializable

   Attributes
     protected
   Definition Classes
     Enumeration
   Annotations
     @SerialVersionUID()

3. #### abstract class Value extends Ordered[Value] with Serializable

   Definition Classes
     Enumeration
   Annotations
     @SerialVersionUID()

4. #### class ValueSet extends AbstractSet[Value] with SortedSet[Value] with SortedSetLike[Value, ValueSet] with Serializable

   Definition Classes
     Enumeration

### Value Members

1. #### final def !=(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

2. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

3. #### final def ==(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

4. #### final def SchemaValue: SchemaVal

   Attributes
     protected
   Definition Classes
     FieldEnumeration

5. #### final def Value(i: Int, name: String): Value

   Attributes
     protected
   Definition Classes
     Enumeration

6. #### final def Value(name: String): Value

   Attributes
     protected
   Definition Classes
     Enumeration

7. #### final def Value(i: Int): Value

   Attributes
     protected
   Definition Classes
     Enumeration

8. #### final def Value: Value

   Attributes
     protected
   Definition Classes
     Enumeration

9. #### val alleleCountMLE: SchemaVal

10. #### val alleleFrequencyMLE: SchemaVal

11. #### final def apply(x: Int): Value

    Definition Classes
      Enumeration

12. #### final def asInstanceOf[T0]: T0

    Definition Classes
      Any

13. #### val baseQRankSum: SchemaVal

14. #### val clippingRankSum: SchemaVal

15. #### def clone(): AnyRef

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

16. #### val culprit: SchemaVal

17. #### val downsampled: SchemaVal

18. #### final def eq(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

19. #### def equals(arg0: Any): Boolean

    Definition Classes
      AnyRef → Any

20. #### def finalize(): Unit

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )

21. #### final def getClass(): Class[_]

    Definition Classes
      AnyRef → Any

22. #### val haplotypeScore: SchemaVal

23. #### def hashCode(): Int

    Definition Classes
      AnyRef → Any

24. #### val inbreedingCoefficient: SchemaVal

25. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

26. #### val mapq0Reads: SchemaVal

27. #### final def maxId: Int

    Definition Classes
      Enumeration

28. #### val mqRankSum: SchemaVal

29. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

30. #### var nextId: Int

    Attributes
      protected
    Definition Classes
      Enumeration

31. #### var nextName: Iterator[String]

    Attributes
      protected
    Definition Classes
      Enumeration

32. #### final def notify(): Unit

    Definition Classes
      AnyRef

33. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

34. #### val readDepth: SchemaVal

35. #### val readPositionRankSum: SchemaVal

36. #### def readResolve(): AnyRef

    Attributes
      protected
    Definition Classes
      Enumeration

37. #### val recordSchema: Schema

    Definition Classes
      FieldEnumeration

38. #### val rmsMapQ: SchemaVal

39. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

40. #### def toString(): String

    Definition Classes
      Enumeration → AnyRef → Any

41. #### val usedForNegativeTrainingSet: SchemaVal

42. #### val usedForPositiveTrainingSet: SchemaVal

43. #### def values: ValueSet

    Definition Classes
      Enumeration

44. #### val variantCallErrorProbability: SchemaVal

45. #### val variantFilters: SchemaVal

46. #### val variantIsPassing: SchemaVal

47. #### val variantQualityByDepth: SchemaVal

48. #### val vqslod: SchemaVal

49. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

50. #### final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

51. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

52. #### final def withName(s: String): Value

    Definition Classes
      Enumeration

### Inherited from FieldEnumeration

### Inherited from Enumeration

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

### Ungrouped