org.bdgenomics.adam.rdd.read.recalibration

# Recalibrator

#### class Recalibrator extends (DecadentRead) ⇒ AlignmentRecord with Serializable

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Serializable, Serializable, (DecadentRead) ⇒ AlignmentRecord, AnyRef, Any
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1. Recalibrator
2. Serializable
3. Serializable
4. Function1
5. AnyRef
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### Instance Constructors

1. #### new Recalibrator(table: RecalibrationTable, minAcceptableQuality: QualityScore)

### Value Members

1. #### final def !=(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

2. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

3. #### final def ==(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

4. #### def andThen[A](g: (AlignmentRecord) ⇒ A): (DecadentRead) ⇒ A

   Definition Classes
     Function1
   Annotations
     @unspecialized()

5. #### def apply(read: DecadentRead): AlignmentRecord

   Definition Classes
     Recalibrator → Function1

6. #### final def asInstanceOf[T0]: T0

   Definition Classes
     Any

7. #### def clone(): AnyRef

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... )

8. #### def compose[A](g: (A) ⇒ DecadentRead): (A) ⇒ AlignmentRecord

   Definition Classes
     Function1
   Annotations
     @unspecialized()

9. #### def computeQual(read: DecadentRead): Seq[QualityScore]

10. #### final def eq(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

11. #### def equals(arg0: Any): Boolean

    Definition Classes
      AnyRef → Any

12. #### def finalize(): Unit

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )

13. #### final def getClass(): Class[_]

    Definition Classes
      AnyRef → Any

14. #### def hashCode(): Int

    Definition Classes
      AnyRef → Any

15. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

16. #### val minAcceptableQuality: QualityScore

17. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

18. #### final def notify(): Unit

    Definition Classes
      AnyRef

19. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

20. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

21. #### val table: RecalibrationTable

22. #### def toString(): String

    Definition Classes
      Function1 → AnyRef → Any

23. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

24. #### final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

25. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

### Inherited from Serializable

### Inherited from (DecadentRead) ⇒ AlignmentRecord

### Inherited from AnyRef

### Inherited from Any

### Ungrouped