org.bdgenomics.adam.cli

# Fasta2ADAMArgs

#### class Fasta2ADAMArgs extends Args4jBase with ParquetSaveArgs

Linear Supertypes
ParquetSaveArgs, SaveArgs, ParquetArgs, ParquetRDDArgs, Args4jBase, AnyRef, Any
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Inherited

1. Fasta2ADAMArgs
2. ParquetSaveArgs
3. SaveArgs
4. ParquetArgs
5. ParquetRDDArgs
6. Args4jBase
7. AnyRef
8. Any

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### Instance Constructors

1. #### new Fasta2ADAMArgs()

### Value Members

1. #### final def !=(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

2. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

3. #### final def ==(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

4. #### final def asInstanceOf[T0]: T0

   Definition Classes
     Any

5. #### var blockSize: Int

   Definition Classes
     ParquetArgs → ParquetRDDArgs

6. #### def clone(): AnyRef

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... )

7. #### var compressionCodec: CompressionCodecName

   Definition Classes
     ParquetArgs → ParquetRDDArgs

8. #### var disableDictionaryEncoding: Boolean

   Definition Classes
     ParquetArgs → ParquetRDDArgs

9. #### var doPrintUsage: Boolean

   Definition Classes
     Args4jBase

10. #### final def eq(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

11. #### def equals(arg0: Any): Boolean

    Definition Classes
      AnyRef → Any

12. #### var fastaFile: String

13. #### def finalize(): Unit

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )

14. #### var fragmentLength: Long

15. #### final def getClass(): Class[_]

    Definition Classes
      AnyRef → Any

16. #### def hashCode(): Int

    Definition Classes
      AnyRef → Any

17. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

18. #### var logLevel: String

    Definition Classes
      ParquetArgs

19. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

20. #### final def notify(): Unit

    Definition Classes
      AnyRef

21. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

22. #### var outputPath: String

    Definition Classes
      Fasta2ADAMArgs → SaveArgs

23. #### var pageSize: Int

    Definition Classes
      ParquetArgs → ParquetRDDArgs

24. #### var printMetrics: Boolean

    Definition Classes
      Args4jBase

25. #### var reads: String

26. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

27. #### def toString(): String

    Definition Classes
      AnyRef → Any

28. #### var verbose: Boolean

29. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

30. #### final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

31. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

### Inherited from ParquetSaveArgs

### Inherited from SaveArgs

### Inherited from ParquetArgs

### Inherited from ParquetRDDArgs

### Inherited from Args4jBase

### Inherited from AnyRef

### Inherited from Any

### Ungrouped