org.bdgenomics.adam

# converters

#### package converters

Visibility

1. Public
2. All

### Type Members

1. #### class AlignmentRecordConverter extends Serializable

2. #### case class AttrKey(adamKey: String, attrConverter: (AnyRef) ⇒ AnyRef, hdrLine: VCFCompoundHeaderLine) extends Product with Serializable

3. #### class FastqRecordConverter extends Serializable with Logging

4. #### class SAMRecordConverter extends Serializable with Logging

5. #### class VariantContextConverter extends Serializable with Logging

   This class converts VCF data to and from ADAM.

   This class converts VCF data to and from ADAM. This translation occurs at the abstraction level of the GATK VariantContext which represents VCF data, and at the ADAMVariantContext level, which aggregates ADAM variant/genotype/annotation data together.

   If an annotation has a corresponding set of fields in the VCF standard, a conversion to/from the GATK VariantContext should be implemented in this class.

### Value Members

1. #### object AlignmentRecordConverter extends Serializable

2. #### object AttrKey extends Serializable

3. #### object FragmentConverter extends Serializable

4. #### object VariantAnnotationConverter extends Serializable

5. #### object VariantContextConverter extends Serializable

### Ungrouped