org.bdgenomics.adam.rich.DecadentRead

# Residue

#### class Residue extends AnyRef

In biochemistry and molecular biology, a "residue" refers to a specific monomer within a polymeric chain, such as DNA.

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### Value Members

1. #### final def !=(arg0: Any): Boolean

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2. #### final def ##(): Int

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3. #### final def ==(arg0: Any): Boolean

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4. #### final def asInstanceOf[T0]: T0

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5. #### def base: Char

   Nucleotide at this offset.

   Nucleotide at this offset.

   TODO: Return values of meaningful type, e.g. `DNABase`.

6. #### def clone(): AnyRef

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7. #### final def eq(arg0: AnyRef): Boolean

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8. #### def equals(arg0: Any): Boolean

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9. #### def finalize(): Unit

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10. #### final def getClass(): Class[_]

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11. #### def hashCode(): Int

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12. #### def isInsertion: Boolean

13. #### final def isInstanceOf[T0]: Boolean

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14. #### def isMismatch(includeInsertions: Boolean = true): Boolean

15. #### def isRegularBase: Boolean

16. #### def isSNP: Boolean

17. #### final def ne(arg0: AnyRef): Boolean

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18. #### final def notify(): Unit

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19. #### final def notifyAll(): Unit

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20. #### val offset: Int

21. #### def quality: QualityScore

22. #### def read: DecadentRead

23. #### def referencePosition: ReferencePosition

24. #### def referencePositionOption: Option[ReferencePosition]

25. #### def referenceSequenceContext: Option[ReferenceSequenceContext]

26. #### final def synchronized[T0](arg0: ⇒ T0): T0

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27. #### def toString(): String

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28. #### final def wait(): Unit

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29. #### final def wait(arg0: Long, arg1: Int): Unit

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30. #### final def wait(arg0: Long): Unit

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