org.bdgenomics.adam.apis.java

# JavaAlignmentRecordRDD

#### class JavaAlignmentRecordRDD extends Serializable

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1. JavaAlignmentRecordRDD
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### Instance Constructors

1. #### new JavaAlignmentRecordRDD(jrdd: JavaRDD[AlignmentRecord])

### Value Members

1. #### final def !=(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

2. #### final def ##(): Int

   Definition Classes
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3. #### final def ==(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

4. #### def adamSAMSave(filePath: String): Unit

   Saves this RDD to disk as a SAM file.

   Saves this RDD to disk as a SAM file.

   filePath

     Path to save the file at.

5. #### def adamSAMSave(filePath: String, asSam: Boolean): Unit

   Saves this RDD to disk as a SAM/BAM file.

   Saves this RDD to disk as a SAM/BAM file.

   filePath

     Path to save the file at.

   asSam

     If true, saves as SAM. If false, saves as BAM.

6. #### def adamSave(filePath: String): Unit

   Saves this RDD to disk as a Parquet file.

   Saves this RDD to disk as a Parquet file.

   filePath

     Path to save the file at.

7. #### def adamSave(filePath: String, blockSize: Integer, pageSize: Integer, compressCodec: CompressionCodecName, disableDictionaryEncoding: Boolean): Unit

   Saves this RDD to disk as a Parquet file.

   Saves this RDD to disk as a Parquet file.

   filePath

     Path to save the file at.

   blockSize

     Size per block.

   pageSize

     Size per page.

   compressCodec

     Name of the compression codec to use.

   disableDictionaryEncoding

     Whether or not to disable bit-packing.

8. #### final def asInstanceOf[T0]: T0

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9. #### def clone(): AnyRef

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10. #### final def eq(arg0: AnyRef): Boolean

    Definition Classes
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11. #### def equals(arg0: Any): Boolean

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12. #### def finalize(): Unit

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      protected[java.lang]
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      @throws( classOf[java.lang.Throwable] )

13. #### final def getClass(): Class[_]

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14. #### def hashCode(): Int

    Definition Classes
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15. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

16. #### val jrdd: JavaRDD[AlignmentRecord]

17. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
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18. #### final def notify(): Unit

    Definition Classes
      AnyRef

19. #### final def notifyAll(): Unit

    Definition Classes
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20. #### final def synchronized[T0](arg0: ⇒ T0): T0

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21. #### def toString(): String

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22. #### final def wait(): Unit

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23. #### final def wait(arg0: Long, arg1: Int): Unit

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24. #### final def wait(arg0: Long): Unit

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### Inherited from Serializable

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### Inherited from Any

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