org.bdgenomics.adam.cli

# Adam2FastqArgs

#### class Adam2FastqArgs extends Args4jBase with ParquetLoadSaveArgs

Linear Supertypes
ParquetLoadSaveArgs, SaveFileArgs, LoadFileArgs, ParquetSaveArgs, SaveArgs, ParquetArgs, ParquetRDDArgs, Args4jBase, AnyRef, Any
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Inherited

1. Adam2FastqArgs
2. ParquetLoadSaveArgs
3. SaveFileArgs
4. LoadFileArgs
5. ParquetSaveArgs
6. SaveArgs
7. ParquetArgs
8. ParquetRDDArgs
9. Args4jBase
10. AnyRef
11. Any

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### Instance Constructors

1. #### new Adam2FastqArgs()

### Value Members

1. #### final def !=(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

2. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

3. #### final def ==(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

4. #### final def asInstanceOf[T0]: T0

   Definition Classes
     Any

5. #### var blockSize: Int

   Definition Classes
     ParquetArgs → ParquetRDDArgs

6. #### def clone(): AnyRef

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... )

7. #### var compressionCodec: CompressionCodecName

   Definition Classes
     ParquetArgs → ParquetRDDArgs

8. #### var disableDictionaryEncoding: Boolean

   Definition Classes
     ParquetArgs → ParquetRDDArgs

9. #### var disableProjection: Boolean

10. #### var doPrintUsage: Boolean

    Definition Classes
      Args4jBase

11. #### final def eq(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

12. #### def equals(arg0: Any): Boolean

    Definition Classes
      AnyRef → Any

13. #### def finalize(): Unit

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )

14. #### final def getClass(): Class[_]

    Definition Classes
      AnyRef → Any

15. #### def hashCode(): Int

    Definition Classes
      AnyRef → Any

16. #### var inputPath: String

    Definition Classes
      LoadFileArgs

17. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

18. #### var logLevel: String

    Definition Classes
      ParquetArgs

19. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

20. #### final def notify(): Unit

    Definition Classes
      AnyRef

21. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

22. #### var outputOriginalBaseQualities: Boolean

23. #### var outputPath: String

    Definition Classes
      SaveFileArgs

24. #### var outputPath2: String

25. #### var pageSize: Int

    Definition Classes
      ParquetArgs → ParquetRDDArgs

26. #### var persistLevel: String

27. #### var printMetrics: Boolean

    Definition Classes
      Args4jBase

28. #### var repartition: Int

29. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

30. #### def toString(): String

    Definition Classes
      AnyRef → Any

31. #### var validationStringency: ValidationStringency

32. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

33. #### final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

34. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

### Inherited from ParquetLoadSaveArgs

### Inherited from SaveFileArgs

### Inherited from LoadFileArgs

### Inherited from ParquetSaveArgs

### Inherited from SaveArgs

### Inherited from ParquetArgs

### Inherited from ParquetRDDArgs

### Inherited from Args4jBase

### Inherited from AnyRef

### Inherited from Any

### Ungrouped