org.bdgenomics.adam.models

# Extractable

#### trait Extractable extends AnyRef

A trait for values (usually regions or collections of regions) that can be subsetted or extracted out of a larger region string -- for example, exons or transcripts which have a sequence defined in terms of their coordinates against a reference chromosome. Passing the sequence of the reference chromosome to a transcript's 'extractSequence' method will return the sequence of the transcript.

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AnyRef, Any
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BlockExtractable, CDS, Exon, UTR
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### Abstract Value Members

1. #### abstract def extractSequence(referenceSequence: String): String

   Returns the subset of the given referenceSequence that corresponds to this Extractable (not necessarily a contiguous substring, and possibly reverse- complemented or transformed in other ways).

   Returns the subset of the given referenceSequence that corresponds to this Extractable (not necessarily a contiguous substring, and possibly reverse- complemented or transformed in other ways).

   referenceSequence

     The reference sequence (e.g. chromosomal sequence) with respect to which the Extractable's coordinates or locators are given

   returns

     the String representation of this Extractable

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