org.bdgenomics.adam.models

# UTR

#### case class UTR(transcriptId: String, strand: Boolean, region: ReferenceRegion) extends BlockExtractable with Product with Serializable

UnTranslated Regions

transcriptId
strand
region

Linear Supertypes
Serializable, Serializable, Product, Equals, BlockExtractable, Extractable, AnyRef, Any
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1. UTR
2. Serializable
3. Serializable
4. Product
5. Equals
6. BlockExtractable
7. Extractable
8. AnyRef
9. Any

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### Instance Constructors

1. #### new UTR(transcriptId: String, strand: Boolean, region: ReferenceRegion)

   transcriptId
   strand
   region

### Value Members

1. #### final def !=(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

2. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

3. #### final def ==(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

4. #### final def asInstanceOf[T0]: T0

   Definition Classes
     Any

5. #### def clone(): AnyRef

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... )

6. #### final def eq(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

7. #### def extractSequence(referenceSequence: String): String

   Returns the subset of the given referenceSequence that corresponds to this Extractable (not necessarily a contiguous substring, and possibly reverse- complemented or transformed in other ways).

   Returns the subset of the given referenceSequence that corresponds to this Extractable (not necessarily a contiguous substring, and possibly reverse- complemented or transformed in other ways).

   referenceSequence

     The reference sequence (e.g. chromosomal sequence) with respect to which the Extractable's coordinates or locators are given

   returns

     the String representation of this Extractable

   Definition Classes
     BlockExtractable → Extractable

8. #### def finalize(): Unit

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( classOf[java.lang.Throwable] )

9. #### final def getClass(): Class[_]

   Definition Classes
     AnyRef → Any

10. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

11. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

12. #### final def notify(): Unit

    Definition Classes
      AnyRef

13. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

14. #### val region: ReferenceRegion

15. #### val strand: Boolean

16. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

17. #### val transcriptId: String

18. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

19. #### final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

20. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

### Inherited from Serializable

### Inherited from Product

### Inherited from Equals

### Inherited from BlockExtractable

### Inherited from Extractable

### Inherited from AnyRef

### Inherited from Any

### Ungrouped