org.bdgenomics.adam.projections

AlignmentRecordField

object AlignmentRecordField extends FieldEnumeration

This enumeration exist in order to reduce typo errors in the code. It needs to be kept in sync with any changes to Read.

This enumeration is necessary because Parquet needs the field string names for predicates and projections.

Linear Supertypes
FieldEnumeration, Enumeration, Serializable, Serializable, AnyRef, Any
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  1. AlignmentRecordField
  2. FieldEnumeration
  3. Enumeration
  4. Serializable
  5. Serializable
  6. AnyRef
  7. Any
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Type Members

  1. class SchemaVal extends Val with FieldValue

    Definition Classes
    FieldEnumeration

  2. class Val extends Value with Serializable

    Attributes
    protected
    Definition Classes
    Enumeration
    Annotations
    @SerialVersionUID()

  3. abstract class Value extends Ordered[Value] with Serializable

    Definition Classes
    Enumeration
    Annotations
    @SerialVersionUID()

  4. class ValueSet extends AbstractSet[Value] with SortedSet[Value] with SortedSetLike[Value, ValueSet] with Serializable

    Definition Classes
    Enumeration

Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  4. final def SchemaValue: SchemaVal

    Attributes
    protected
    Definition Classes
    FieldEnumeration

  5. final def Value(i: Int, name: String): Value

    Attributes
    protected
    Definition Classes
    Enumeration

  6. final def Value(name: String): Value

    Attributes
    protected
    Definition Classes
    Enumeration

  7. final def Value(i: Int): Value

    Attributes
    protected
    Definition Classes
    Enumeration

  8. final def Value: Value

    Attributes
    protected
    Definition Classes
    Enumeration

  9. final def apply(x: Int): Value

    Definition Classes
    Enumeration

  10. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  11. val attributes: SchemaVal

  12. val cigar: SchemaVal

  13. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  14. val contig: SchemaVal

  15. val duplicateRead: SchemaVal

  16. val end: SchemaVal

  17. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  18. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  19. val failedVendorQualityChecks: SchemaVal

  20. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  21. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  22. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  23. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  24. val mapq: SchemaVal

  25. val mateAlignmentStart: SchemaVal

  26. val mateContig: SchemaVal

  27. val mateMapped: SchemaVal

  28. val mateNegativeStrand: SchemaVal

  29. final def maxId: Int

    Definition Classes
    Enumeration

  30. val mismatchingPositions: SchemaVal

  31. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  32. var nextId: Int

    Attributes
    protected
    Definition Classes
    Enumeration

  33. var nextName: Iterator[String]

    Attributes
    protected
    Definition Classes
    Enumeration

  34. final def notify(): Unit

    Definition Classes
    AnyRef

  35. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  36. val origQual: SchemaVal

  37. val primaryAlignment: SchemaVal

  38. val properPair: SchemaVal

  39. val qual: SchemaVal

  40. val readInFragment: SchemaVal

  41. val readMapped: SchemaVal

  42. val readName: SchemaVal

  43. val readNegativeStrand: SchemaVal

  44. val readPaired: SchemaVal

  45. def readResolve(): AnyRef

    Attributes
    protected
    Definition Classes
    Enumeration

  46. val recordGroupDescription: SchemaVal

  47. val recordGroupFlowOrder: SchemaVal

  48. val recordGroupId: SchemaVal

  49. val recordGroupKeySequence: SchemaVal

  50. val recordGroupLibrary: SchemaVal

  51. val recordGroupName: SchemaVal

  52. val recordGroupPlatform: SchemaVal

  53. val recordGroupPlatformUnit: SchemaVal

  54. val recordGroupPredictedMedianInsertSize: SchemaVal

  55. val recordGroupRunDateEpoch: SchemaVal

  56. val recordGroupSample: SchemaVal

  57. val recordGroupSequencingCenter: SchemaVal

  58. val recordSchema: Schema

    Definition Classes
    FieldEnumeration

  59. val secondaryAlignment: SchemaVal

  60. val sequence: SchemaVal

  61. val start: SchemaVal

  62. val supplementaryAlignment: SchemaVal

  63. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  64. def toString(): String

    Definition Classes
    Enumeration → AnyRef → Any

  65. def values: ValueSet

    Definition Classes
    Enumeration

  66. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  67. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  68. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  69. final def withName(s: String): Value

    Definition Classes
    Enumeration

Inherited from FieldEnumeration

Inherited from Enumeration

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped