org.bdgenomics.adam.models

# MultiContigNonoverlappingRegions

#### class MultiContigNonoverlappingRegions extends Serializable

Creates a multi-reference-region collection of NonoverlappingRegions -- see the scaladocs to NonoverlappingRegions.

Linear Supertypes
Serializable, Serializable, AnyRef, Any
Ordering

1. Alphabetic
2. By inheritance

Inherited

1. MultiContigNonoverlappingRegions
2. Serializable
3. Serializable
4. AnyRef
5. Any

1. Hide All
2. Show all

Learn more about member selection
Visibility

1. Public
2. All

### Instance Constructors

1. #### new MultiContigNonoverlappingRegions(regions: Seq[(String, Iterable[ReferenceRegion])])

   regions

     A Seq of ReferencRegions, pre-partitioned by their referenceNames. So, for a given pair (x, regs) in this Seq, all regions R in regs must satisfy R.referenceName == x. Furthermore, all the x's must be valid reference names with respect to the sequence dictionary.

### Value Members

1. #### final def !=(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

2. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

3. #### final def ==(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

4. #### final def asInstanceOf[T0]: T0

   Definition Classes
     Any

5. #### def clone(): AnyRef

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... )

6. #### final def eq(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

7. #### def equals(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

8. #### def filter[U](value: (ReferenceRegion, U)): Boolean

9. #### def finalize(): Unit

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( classOf[java.lang.Throwable] )

10. #### final def getClass(): Class[_]

    Definition Classes
      AnyRef → Any

11. #### def hashCode(): Int

    Definition Classes
      AnyRef → Any

12. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

13. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

14. #### final def notify(): Unit

    Definition Classes
      AnyRef

15. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

16. #### val regionMap: Map[String, NonoverlappingRegions]

17. #### def regionsFor[U](regionable: (ReferenceRegion, U)): Iterable[ReferenceRegion]

18. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

19. #### def toString(): String

    Definition Classes
      AnyRef → Any

20. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

21. #### final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

22. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

### Ungrouped