org.bdgenomics.adam.rdd.read

AlignmentRecordRDD

abstract class AlignmentRecordRDD extends GenomicRDD[AlignmentRecord]

Linear Supertypes
GenomicRDD[AlignmentRecord], AnyRef, Any
Known Subclasses
AlignedReadRDD, UnalignedReadRDD
Ordering
  1. Alphabetic
  2. By inheritance
Inherited
  1. AlignmentRecordRDD
  2. GenomicRDD
  3. AnyRef
  4. Any
  1. Hide All
  2. Show all
Learn more about member selection
Visibility
  1. Public
  2. All

Instance Constructors

  1. new AlignmentRecordRDD()

Abstract Value Members

  1. abstract val rdd: RDD[AlignmentRecord]

    Definition Classes
    GenomicRDD

  2. abstract val recordGroups: RecordGroupDictionary

  3. abstract val sequences: SequenceDictionary

    Definition Classes
    GenomicRDD

Concrete Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  5. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  6. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  7. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  8. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  9. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  10. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  11. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  12. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  13. final def notify(): Unit

    Definition Classes
    AnyRef

  14. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  15. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  16. def toString(): String

    Definition Classes
    AnyRef → Any

  17. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  18. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  19. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from GenomicRDD[AlignmentRecord]

Inherited from AnyRef

Inherited from Any

Ungrouped