OFFSET_SIZE
TwoBitFile
Observation
recalibration
ObservationAccumulator
recalibration
ObservationAccumulatorComb
Timers
ObservationAccumulatorSeq
Timers
ObservationTable
recalibration
OntologyTermField
projections
OptionalPositionOrdering
models
OptionalReferenceOrdering
models
OptionalRegionOrdering
models
OutFormatter
rdd
observed
BaseQualityRecalibration
omimId
DatabaseVariantAnnotationField
onlyReadMapped
DuplicateMetrics
ontologyTerms
FeatureField
opt
ReferenceRegion
orderingForOptionalPositions
ReferencePosition ReferenceRegion
orderingForPositions
ReferencePosition ReferenceRegion
org
root
orientation
ReferencePosition ReferenceRegion
origQual
AlignmentRecordField
outputFormatClass
InstrumentedADAMBAMOutputFormat InstrumentedADAMBAMOutputFormatHeaderLess InstrumentedADAMCRAMOutputFormat InstrumentedADAMCRAMOutputFormatHeaderLess InstrumentedADAMSAMOutputFormat InstrumentedADAMSAMOutputFormatHeaderLess
outstream
AvroSerializer
overlap
TargetOrdering
overlaps
ReferenceRegion
overlapsReferencePosition
RichAlignmentRecord
overwriteExistingTags
MDTagging