ExtrasTables
recalibration
empiricalErrorProbability
Observation
empiricalQuality
Observation
empty
RecordGroupDictionary SequenceDictionary DuplicateMetrics Aggregate Observation
emptyFailedQuality
FlagStatMetrics
emptyFn
FullOuterShuffleRegionJoin InnerShuffleRegionJoin InnerShuffleRegionJoinAndGroupByLeft LeftOuterShuffleRegionJoin RightOuterShuffleRegionJoin RightOuterShuffleRegionJoinAndGroupByLeft ShuffleRegionJoin
emptyPassedQuality
FlagStatMetrics
enableVisitLogging
BaseQualityRecalibration
encoder
AvroSerializer
encoding
IntervalListReader
end
Coverage ReferenceRegion AlignmentRecordField FeatureField GenotypeField VariantField MdTag
endpoints
NonoverlappingRegions
ensemblGeneId
DatabaseVariantAnnotationField
ensemblTranscriptIds
DatabaseVariantAnnotationField
entries
ObservationTable
equals
RecordGroup SequenceDictionary SequenceRecord CovariateKey CovariateSpace CycleCovariate DinucCovariate Observation RichVariant MdTag QualityScore
errorProbability
QualityScore
errorProbabilityToPhred
PhredUtils
exonId
FeatureField
expectedMismatches
Aggregate
extract
NucleotideContigFragmentRDD ReferenceContigMap ReferenceFile TwoBitFile
extras
CovariateKey CovariateSpace
extrasTables
ExtrasTables