PER_BLOCK_SIZE
TwoBitFile
ParquetFileTraversable
util
ParquetLoad
Timers
ParquetLogger
util
PerformDuplicateMarking
Timers
PhredUtils
util
PositionOrdering
models
ProgramRecord
models
Projection
projections
pad
ReferenceRegion
pairedFirstPrimaryMappedReads
ReadBucket
pairedFirstSecondaryMappedReads
ReadBucket
pairedInSequencing
FlagStatMetrics
pairedSecondPrimaryMappedReads
ReadBucket
pairedSecondSecondaryMappedReads
ReadBucket
parentIds
FeatureField
parseAttribute
AttributeUtils
parseAttributes
AttributeUtils
partitionAndJoin
BroadcastRegionJoin RegionJoin ShuffleRegionJoin
partitionSize
FullOuterShuffleRegionJoin GenomicRegionPartitioner InnerShuffleRegionJoin InnerShuffleRegionJoinAndGroupByLeft LeftOuterShuffleRegionJoin RightOuterShuffleRegionJoin RightOuterShuffleRegionJoinAndGroupByLeft ShuffleRegionJoin MDTagging
paths
ParquetFileTraversable
pattern
RegExp
patternString
RegExp
pgl
SAMFileHeaderWritable
phase
FeatureField
phaseQuality
GenotypeField
phaseSetId
GenotypeField
phred
QualityScore
phredToErrorProbability
PhredUtils
phredToErrorProbabilityCache
PhredUtils
phredToLogProbability
PhredUtils
phredToSuccessProbability
PhredUtils
phredToSuccessProbabilityCache
PhredUtils
phylop
DatabaseVariantAnnotationField
pipe
GenomicRDD
platform
RecordGroup
platformUnit
RecordGroup
ploidy
RichGenotype
pos
ReferencePosition ReferenceSequenceContext
position
VariantContext
predictedMedianInsertSize
RecordGroup
previousID
ProgramRecord
primaryAlignment
AlignmentRecordField
primaryMapped
SingleReadBucket
processingDescription
GenotypeField
projections
adam
properPair
AlignmentRecordField
properlyPaired
FlagStatMetrics