FILE_INDEX_OFFSET
TwoBitFile
FeatureField
projections
FeatureRDD
features
FieldEnumeration
projections
FieldValue
projections
FileMerger
rdd
Filter
projections
FindTargets
Timers
FlagStat
read
FlagStatMetrics
read
Flattener
util
Float
TagType
FragmentRDD
fragment
FullOuterShuffleRegionJoin
rdd
failedQuality
FlagStatMetrics
failedVendorQualityChecks
AlignmentRecordField
featureId
FeatureField
featureType
FeatureField
features
rdd
filter
MultiContigNonoverlappingRegions
filterByOverlappingRegion
GenomicRDD
find
RegExp
findOverlappingRegions
NonoverlappingRegions
findTargets
RealignmentTargetFinder
fivePrimePosition
RichAlignmentRecord
fivePrimeReferencePosition
RichAlignmentRecord
flagStat
AlignmentRecordRDD
flankAdjacentFragments
NucleotideContigFragmentRDD
flatten
CoverageRDD
flattenRddByRegions
GenomicRDD
flattenRecord
Flattener
flattenSchema
Flattener
flowOrder
RecordGroup
foreach
IntervalListReader ParquetFileTraversable
fragment
rdd
fragmentEndPosition
NucleotideContigFragmentField
fragmentNumber
NucleotideContigFragmentField
fragmentSequence
NucleotideContigFragmentField
fragmentStartPosition
NucleotideContigFragmentField
fragmentsToReadsConversionFn
ADAMContext
frame
FeatureField
fromADAMContig
SequenceRecord
fromADAMContigFragment
SequenceRecord
fromAvro
RecordGroup SequenceDictionary
fromErrorProbability
QualityScore
fromSAMHeader
RecordGroupDictionary SequenceDictionary
fromSAMReader
RecordGroupDictionary SequenceDictionary
fromSAMSequenceDictionary
SequenceDictionary
fromSAMSequenceRecord
SequenceRecord
fromSpecificRecord
SequenceRecord
fromVCFHeader
SequenceDictionary
fullOuterShuffleRegionJoin
GenomicRDD