ParquetFileTraversable
util
ParquetLoad
Timers
ParquetLogger
util
PerformDuplicateMarking
Timers
PhredUtils
util
PositionOrdering
models
Projection
projections
pad
ReferenceRegion
parentIds
FeatureField
parseAttribute
AttributeUtils
parseAttributes
AttributeUtils
partitionAndJoin
InnerTreeRegionJoin InnerTreeRegionJoinAndGroupByRight RegionJoin RightOuterTreeRegionJoin RightOuterTreeRegionJoinAndGroupByRight ShuffleRegionJoin
partitionSize
FullOuterShuffleRegionJoin GenomicRegionPartitioner InnerShuffleRegionJoin InnerShuffleRegionJoinAndGroupByLeft LeftOuterShuffleRegionJoin RightOuterShuffleRegionJoin RightOuterShuffleRegionJoinAndGroupByLeft ShuffleRegionJoin
phase
FeatureField
phaseQuality
DefaultHeaderLines GenotypeField
phaseSetId
DefaultHeaderLines GenotypeField
phased
GenotypeField
phredLikelihoods
DefaultHeaderLines
phredToErrorProbability
PhredUtils
phredToLogProbability
PhredUtils
phredToSuccessProbability
PhredUtils
pipe
GenomicRDD
platform
RecordGroup RecordGroupMetadataField
platformUnit
RecordGroup RecordGroupMetadataField
pos
ReferencePosition
position
VariantContext
predictedMedianInsertSize
RecordGroup RecordGroupMetadataField
preprocessReadsForRealignment
ConsensusGenerator
primaryAlignment
AlignmentRecordField
processingDescription
GenotypeField
projections
adam
properPair
AlignmentRecordField
proteinHgvs
TranscriptEffectField
proteinLength
TranscriptEffectField
proteinPosition
TranscriptEffectField