FeatureField
projections
FeatureRDD
feature
FieldEnumeration
projections
FieldValue
projections
Filter
projections
FinalizingRealignments
Timers
FindTargets
Timers
Float
TagType
FragmentField
projections
FragmentRDD
fragment
FullOuterShuffleJoin
Timers
FullOuterShuffleRegionJoin
rdd
failedVendorQualityChecks
AlignmentRecordField
feature
rdd
featureId
FeatureField TranscriptEffectField
featureType
FeatureField TranscriptEffectField
filePath
IndexedFastaFile
filterByOverlappingRegion
GenomicRDD
filterByOverlappingRegions
GenomicRDD
filtersApplied
VariantField
filtersFailed
VariantField
filtersPassed
VariantField
findConsensus
ConsensusGenerator
fisherStrand
DefaultHeaderLines
fisherStrandBiasPValue
VariantCallingAnnotationsField
fivePrimePosition
RichAlignmentRecord
fivePrimeReferencePosition
RichAlignmentRecord
flagStat
AlignmentRecordRDD
flankAdjacentFragments
NucleotideContigFragmentRDD
flatten
CoverageRDD
flattenRddByRegions
GenomicRDD
flowOrder
RecordGroup RecordGroupMetadataField
foreach
ParquetFileTraversable
formatHeaderLines
DefaultHeaderLines
formatReadDepth
DefaultHeaderLines
forwardReadDepth
DefaultHeaderLines VariantAnnotationField
fragment
rdd
fragmentEndPosition
NucleotideContigFragmentField
fragmentLength
NucleotideContigFragmentField
fragmentNumber
NucleotideContigFragmentField
fragmentSequence
NucleotideContigFragmentField
fragmentSize
FragmentField
fragmentStartPosition
NucleotideContigFragmentField
fragmentsToReadsConversionFn
ADAMContext
frame
FeatureField
fromADAMContig
SequenceRecord
fromADAMContigFragment
SequenceRecord
fromAvro
RecordGroup SequenceDictionary
fromKnownIndels
ConsensusGenerator
fromReads
ConsensusGenerator
fromReadsWithSmithWaterman
ConsensusGenerator
fromSAMHeader
RecordGroupDictionary
fromSAMSequenceDictionary
SequenceDictionary
fromSAMSequenceRecord
SequenceRecord
fromStart
ReferenceRegion
fromVCFHeader
SequenceDictionary
fullOuterShuffleRegionJoin
GenomicRDD