ObservationAccumulatorComb
Timers
ObservationAccumulatorSeq
Timers
ObservingRead
Timers
OntologyTermField
projections
OptionalPositionOrdering
models
OptionalReferenceOrdering
models
OptionalRegionOrdering
models
OutFormatter
rdd
oldCigar
AlignmentRecordField
oldPosition
AlignmentRecordField
ontologyTerms
FeatureField
opt
ReferenceRegion
orderingForOptionalPositions
ReferencePosition ReferenceRegion
orderingForPositions
ReferencePosition ReferenceRegion
org
root
origQual
AlignmentRecordField
outputFormatClass
InstrumentedADAMBAMOutputFormat InstrumentedADAMBAMOutputFormatHeaderLess InstrumentedADAMCRAMOutputFormat InstrumentedADAMCRAMOutputFormatHeaderLess InstrumentedADAMSAMOutputFormat InstrumentedADAMSAMOutputFormatHeaderLess
outstream
AvroSerializer
overlaps
ReferenceRegion
overlapsReferencePosition
RichAlignmentRecord