MapTargets
Timers
MarkDuplicatesInDriver
Timers
MarkReads
Timers
Match
MdTagEvent
MdTag
models
MdTagEvent
models
Mismatch
MdTagEvent
MultisampleAvroGenomicRDD
rdd
MultisampleGenomicRDD
rdd
makeFormatter
AnySAMInFormatterCompanion BAMInFormatter SAMInFormatter
makeIterator
FullOuterShuffleRegionJoin InnerShuffleRegionJoin InnerShuffleRegionJoinAndGroupByLeft LeftOuterShuffleRegionJoin RightOuterShuffleRegionJoin RightOuterShuffleRegionJoinAndGroupByLeft ShuffleRegionJoin
makeWriter
AnySAMInFormatter BAMInFormatter SAMInFormatter
mapq
AlignmentRecordField
mapq0
DefaultHeaderLines
mapq0Reads
VariantCallingAnnotationsField
markDuplicates
FragmentRDD AlignmentRecordRDD
matches
MdTag
mateAlignmentEnd
AlignmentRecordField
mateAlignmentStart
AlignmentRecordField
mateContigName
AlignmentRecordField
mateMapped
AlignmentRecordField
mateNegativeStrand
AlignmentRecordField
md5
SequenceRecord
mdTag
IncorrectMDTagException RichAlignmentRecord
merge
ReferenceRegion
mergeFragments
NucleotideContigFragmentRDD
messages
TranscriptEffectField
minReadDepth
DefaultHeaderLines GenotypeField
mismatchedBase
MdTag
mismatches
MdTag
mismatchingPositions
AlignmentRecordField
models
adam
moveAlignment
MdTag
mqRankSum
VariantCallingAnnotationsField