org.bdgenomics.adam.sql

# Genotype

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Related Docs: class Genotype | package sql

#### object Genotype extends Serializable

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### Value Members

1. #### final def !=(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

2. #### final def ##(): Int

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3. #### final def ==(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

4. #### def apply(variant: Option[Variant], contigName: Option[String], start: Option[Long], end: Option[Long], variantCallingAnnotations: Option[VariantCallingAnnotations], sampleId: Option[String], sampleDescription: Option[String], processingDescription: Option[String], alleles: Seq[String], expectedAlleleDosage: Option[Float], referenceReadDepth: Option[Int], alternateReadDepth: Option[Int], readDepth: Option[Int], minReadDepth: Option[Int], genotypeQuality: Option[Int], genotypeLikelihoods: Seq[Double], nonReferenceLikelihoods: Seq[Double], strandBiasComponents: Seq[Int], splitFromMultiAllelic: Option[Boolean], phased: Option[Boolean], phaseSetId: Option[Int], phaseQuality: Option[Int]): Genotype

5. #### final def asInstanceOf[T0]: T0

   Definition Classes
     Any

6. #### def clone(): AnyRef

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     protected[java.lang]
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     @throws( ... )

7. #### final def eq(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

8. #### def equals(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

9. #### def finalize(): Unit

   Attributes
     protected[java.lang]
   Definition Classes
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   Annotations
     @throws( classOf[java.lang.Throwable] )

10. #### def fromAvro(record: formats.avro.Genotype): Genotype

11. #### final def getClass(): Class[_]

    Definition Classes
      AnyRef → Any

12. #### def hashCode(): Int

    Definition Classes
      AnyRef → Any

13. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

14. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

15. #### final def notify(): Unit

    Definition Classes
      AnyRef

16. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

17. #### final def synchronized[T0](arg0: ⇒ T0): T0

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18. #### def toString(): String

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19. #### final def wait(): Unit

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      @throws( ... )

20. #### final def wait(arg0: Long, arg1: Int): Unit

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      @throws( ... )

21. #### final def wait(arg0: Long): Unit

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      @throws( ... )

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

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