org.bdgenomics.adam.rdd.fragment

# InterleavedFASTQInFormatter

###
Related Docs: object InterleavedFASTQInFormatter | package fragment

#### class InterleavedFASTQInFormatter extends InFormatter[Fragment, FragmentRDD, InterleavedFASTQInFormatter] with Logging

Linear Supertypes
Logging, InFormatter[Fragment, FragmentRDD, InterleavedFASTQInFormatter], Serializable, Serializable, AnyRef, Any
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1. InterleavedFASTQInFormatter
2. Logging
3. InFormatter
4. Serializable
5. Serializable
6. AnyRef
7. Any

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### Value Members

1. #### final def !=(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

2. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

3. #### final def ==(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

4. #### final def asInstanceOf[T0]: T0

   Definition Classes
     Any

5. #### def clone(): AnyRef

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... )

6. #### val companion: InterleavedFASTQInFormatter.type

   Attributes
     protected
   Definition Classes
     InterleavedFASTQInFormatter → InFormatter

7. #### final def eq(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

8. #### def equals(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

9. #### def finalize(): Unit

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( classOf[java.lang.Throwable] )

10. #### final def getClass(): Class[_]

    Definition Classes
      AnyRef → Any

11. #### def hashCode(): Int

    Definition Classes
      AnyRef → Any

12. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

13. #### def isTraceEnabled(): Boolean

    Attributes
      protected
    Definition Classes
      Logging

14. #### def log: Logger

    Attributes
      protected
    Definition Classes
      Logging

15. #### def logDebug(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
      protected
    Definition Classes
      Logging

16. #### def logDebug(msg: ⇒ String): Unit

    Attributes
      protected
    Definition Classes
      Logging

17. #### def logError(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
      protected
    Definition Classes
      Logging

18. #### def logError(msg: ⇒ String): Unit

    Attributes
      protected
    Definition Classes
      Logging

19. #### def logInfo(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
      protected
    Definition Classes
      Logging

20. #### def logInfo(msg: ⇒ String): Unit

    Attributes
      protected
    Definition Classes
      Logging

21. #### def logName: String

    Attributes
      protected
    Definition Classes
      Logging

22. #### def logTrace(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
      protected
    Definition Classes
      Logging

23. #### def logTrace(msg: ⇒ String): Unit

    Attributes
      protected
    Definition Classes
      Logging

24. #### def logWarning(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
      protected
    Definition Classes
      Logging

25. #### def logWarning(msg: ⇒ String): Unit

    Attributes
      protected
    Definition Classes
      Logging

26. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

27. #### final def notify(): Unit

    Definition Classes
      AnyRef

28. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

29. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

30. #### def toString(): String

    Definition Classes
      AnyRef → Any

31. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

32. #### final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

33. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

34. #### def write(os: OutputStream, iter: Iterator[Fragment]): Unit

    Writes alignment records to an output stream in interleaved FASTQ format.

    Writes alignment records to an output stream in interleaved FASTQ format.

    os

      An OutputStream connected to a process we are piping to.

    iter

      An iterator of records to write.

    Definition Classes
      InterleavedFASTQInFormatter → InFormatter

### Inherited from Logging

### Inherited from InFormatter[Fragment, FragmentRDD, InterleavedFASTQInFormatter]

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

### Ungrouped