get

getAlleles

getAlternateAminoAcid

getAlternateReadDepth

getAncestralAllele

getAttributes

getBaseQRankSum

getBasesTrimmedFromEnd

getBasesTrimmedFromStart

getCigar

getClinicalSignificance

getClinvarId

getClippingRankSum

getContig

getContigLength

getContigMD5

getContigName

getCosmicId

getCountAtPosition

getCulprit

getDbSnpId

getDescription

getDownsampled

getDuplicateRead

getExclusiveEnd

getExpectedAlleleDosage

getFailedVendorQualityChecks

getFirstOfPair

getFisherStrandBiasPValue

getFragmentNumber

getFragmentSequence

getFragmentStartPosition

getGeneId

getGeneSymbol

getGenotypeLikelihoods

getGenotypeQuality

getGerpNr

getGerpRs

getHaplotypeScore

getHgvs

getInbreedingCoefficient

getIsPhased

getMapQuality

getMapq

getMapq0Reads

getMateAlignmentStart

getMateContig

getMateMapped

getMateNegativeStrand

getMateReference

getMinReadDepth

getMismatchingPositions

getMqRankSum

getMutationTasterPred

getMutationTasterScore

getMutationTasterScoreConverted

getNonReferenceLikelihoods

getNumReverseStrand

getNumSoftClipped

getNumberOfFragmentsInContig

getOmimId

getOrigQual

getPhaseQuality

getPhaseSetId

getPhylop

getPileup

getPosition

getPrimaryAlignment

getProcessingDescription

getProperPair

getQual

getRangeLength

getRangeOffset

getReadBase

getReadDepth

getReadEnd

getReadEvidence

getReadMapped

getReadName

getReadNegativeStrand

getReadPaired

getReadPositionRankSum

getReadStart

getRecordGroupDescription

getRecordGroupFlowOrder

getRecordGroupId

getRecordGroupKeySequence

getRecordGroupLibrary

getRecordGroupName

getRecordGroupPlatform

getRecordGroupPlatformUnit

getRecordGroupPredictedMedianInsertSize

getRecordGroupRunDateEpoch

getRecordGroupSample

getRecordGroupSequencingCenter

getReferenceAllele

getReferenceAminoAcid

getReferenceBase

getReferenceReadDepth

getReferenceURL

getRmsMapQ

getSampleDescription

getSampleId

getSangerQuality

getSchema

getSecondOfPair

getSequence

getSiftPred

getSiftScore

getSiftScoreConverted

getSplitFromMultiAllelic

getStart

getStrandBiasComponents

getThousandGenomesAlleleCount

getThousandGenomesAlleleFrequency

getTranscriptId

getUsedForNegativeTrainingSet

getUsedForPositiveTrainingSet

getVariant

getVariantAllele

getVariantCallErrorProbability

getVariantCallingAnnotations

getVariantFilters

getVariantIsPassing

getVariantQualityByDepth

getVqslod