setAlleles

setAlternateAminoAcid

setAlternateReadDepth

setAncestralAllele

setAttributes

setBaseQRankSum

setBasesTrimmedFromEnd

setBasesTrimmedFromStart

setCigar

setClinicalSignificance

setClinvarId

setClippingRankSum

setContig

setContigLength

setContigMD5

setContigName

setCosmicId

setCountAtPosition

setCulprit

setDbSnpId

setDescription

setDownsampled

setDuplicateRead

setExclusiveEnd

setExpectedAlleleDosage

setFailedVendorQualityChecks

setFirstOfPair

setFisherStrandBiasPValue

setFragmentNumber

setFragmentSequence

setFragmentStartPosition

setGeneId

setGeneSymbol

setGenotypeLikelihoods

setGenotypeQuality

setGerpNr

setGerpRs

setHaplotypeScore

setHgvs

setInbreedingCoefficient

setIsPhased

setMapQuality

setMapq

setMapq0Reads

setMateAlignmentStart

setMateContig

setMateMapped

setMateNegativeStrand

setMateReference

setMinReadDepth

setMismatchingPositions

setMqRankSum

setMutationTasterPred

setMutationTasterScore

setMutationTasterScoreConverted

setNonReferenceLikelihoods

setNumReverseStrand

setNumSoftClipped

setNumberOfFragmentsInContig

setOmimId

setOrigQual

setPhaseQuality

setPhaseSetId

setPhylop

setPileup

setPosition

setPrimaryAlignment

setProcessingDescription

setProperPair

setQual

setRangeLength

setRangeOffset

setReadBase

setReadDepth

setReadEnd

setReadEvidence

setReadMapped

setReadName

setReadNegativeStrand

setReadPaired

setReadPositionRankSum

setReadStart

setRecordGroupDescription

setRecordGroupFlowOrder

setRecordGroupId

setRecordGroupKeySequence

setRecordGroupLibrary

setRecordGroupName

setRecordGroupPlatform

setRecordGroupPlatformUnit

setRecordGroupPredictedMedianInsertSize

setRecordGroupRunDateEpoch

setRecordGroupSample

setRecordGroupSequencingCenter

setReferenceAllele

setReferenceAminoAcid

setReferenceBase

setReferenceReadDepth

setReferenceURL

setRmsMapQ

setSampleDescription

setSampleId

setSangerQuality

setSecondOfPair

setSequence

setSiftPred

setSiftScore

setSiftScoreConverted

setSplitFromMultiAllelic

setStart

setStrandBiasComponents

setThousandGenomesAlleleCount

setThousandGenomesAlleleFrequency

setTranscriptId

setUsedForNegativeTrainingSet

setUsedForPositiveTrainingSet

setVariant

setVariantAllele

setVariantCallErrorProbability

setVariantCallingAnnotations

setVariantFilters

setVariantIsPassing

setVariantQualityByDepth

setVqslod