org.bdgenomics.adam.avro

ADAMDatabaseVariantAnnotation

class ADAMDatabaseVariantAnnotation extends SpecificRecordBase with SpecificRecord

Linear Supertypes
SpecificRecordBase, Comparable[SpecificRecord], SpecificRecord, IndexedRecord, GenericContainer, AnyRef, Any
Ordering
  1. Alphabetic
  2. By inheritance
Inherited
  1. ADAMDatabaseVariantAnnotation
  2. SpecificRecordBase
  3. Comparable
  4. SpecificRecord
  5. IndexedRecord
  6. GenericContainer
  7. AnyRef
  8. Any
  1. Hide All
  2. Show all
Learn more about member selection
Visibility
  1. Public
  2. All

Instance Constructors

  1. new ADAMDatabaseVariantAnnotation(variant: ADAMVariant, dbSnpId: Integer, geneSymbol: CharSequence, omimId: CharSequence, cosmicId: CharSequence, clinvarId: CharSequence, clinicalSignificance: CharSequence, gerpNr: CharSequence, gerpRs: CharSequence, phylop: Float, ancestralAllele: CharSequence, thousandGenomesAlleleCount: Integer, thousandGenomesAlleleFrequency: Float, siftScore: Float, siftScoreConverted: Float, siftPred: CharSequence, mutationTasterScore: Float, mutationTasterScoreConverted: Float, mutationTasterPred: CharSequence)

  2. new ADAMDatabaseVariantAnnotation()

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. def compareTo(arg0: SpecificRecord): Int

    Definition Classes
    SpecificRecordBase → Comparable

  9. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  10. def equals(arg0: Any): Boolean

    Definition Classes
    SpecificRecordBase → AnyRef → Any

  11. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  12. def get(arg0: Int): AnyRef

    Definition Classes
    ADAMDatabaseVariantAnnotation → SpecificRecordBase → IndexedRecord

  13. def getAncestralAllele(): CharSequence

  14. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  15. def getClinicalSignificance(): CharSequence

  16. def getClinvarId(): CharSequence

  17. def getCosmicId(): CharSequence

  18. def getDbSnpId(): Integer

  19. def getGeneSymbol(): CharSequence

  20. def getGerpNr(): CharSequence

  21. def getGerpRs(): CharSequence

  22. def getMutationTasterPred(): CharSequence

  23. def getMutationTasterScore(): Float

  24. def getMutationTasterScoreConverted(): Float

  25. def getOmimId(): CharSequence

  26. def getPhylop(): Float

  27. def getSchema(): Schema

    Definition Classes
    ADAMDatabaseVariantAnnotation → SpecificRecordBase → GenericContainer

  28. def getSiftPred(): CharSequence

  29. def getSiftScore(): Float

  30. def getSiftScoreConverted(): Float

  31. def getThousandGenomesAlleleCount(): Integer

  32. def getThousandGenomesAlleleFrequency(): Float

  33. def getVariant(): ADAMVariant

  34. def hashCode(): Int

    Definition Classes
    SpecificRecordBase → AnyRef → Any

  35. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  36. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  37. final def notify(): Unit

    Definition Classes
    AnyRef

  38. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  39. def put(arg0: Int, arg1: Any): Unit

    Definition Classes
    ADAMDatabaseVariantAnnotation → SpecificRecordBase → IndexedRecord

  40. def setAncestralAllele(value: CharSequence): Unit

  41. def setClinicalSignificance(value: CharSequence): Unit

  42. def setClinvarId(value: CharSequence): Unit

  43. def setCosmicId(value: CharSequence): Unit

  44. def setDbSnpId(value: Integer): Unit

  45. def setGeneSymbol(value: CharSequence): Unit

  46. def setGerpNr(value: CharSequence): Unit

  47. def setGerpRs(value: CharSequence): Unit

  48. def setMutationTasterPred(value: CharSequence): Unit

  49. def setMutationTasterScore(value: Float): Unit

  50. def setMutationTasterScoreConverted(value: Float): Unit

  51. def setOmimId(value: CharSequence): Unit

  52. def setPhylop(value: Float): Unit

  53. def setSiftPred(value: CharSequence): Unit

  54. def setSiftScore(value: Float): Unit

  55. def setSiftScoreConverted(value: Float): Unit

  56. def setThousandGenomesAlleleCount(value: Integer): Unit

  57. def setThousandGenomesAlleleFrequency(value: Float): Unit

  58. def setVariant(value: ADAMVariant): Unit

  59. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  60. def toString(): String

    Definition Classes
    SpecificRecordBase → AnyRef → Any

  61. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  62. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  63. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from SpecificRecordBase

Inherited from Comparable[SpecificRecord]

Inherited from SpecificRecord

Inherited from IndexedRecord

Inherited from GenericContainer

Inherited from AnyRef

Inherited from Any

Ungrouped