org.bdgenomics.adam.avro

ADAMNucleotideContigFragment

class ADAMNucleotideContigFragment extends SpecificRecordBase with SpecificRecord

Linear Supertypes
SpecificRecordBase, Comparable[SpecificRecord], SpecificRecord, IndexedRecord, GenericContainer, AnyRef, Any
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Inherited
  1. ADAMNucleotideContigFragment
  2. SpecificRecordBase
  3. Comparable
  4. SpecificRecord
  5. IndexedRecord
  6. GenericContainer
  7. AnyRef
  8. Any
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Visibility
  1. Public
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Instance Constructors

  1. new ADAMNucleotideContigFragment(contig: ADAMContig, description: CharSequence, fragmentSequence: CharSequence, fragmentNumber: Integer, fragmentStartPosition: Long, numberOfFragmentsInContig: Integer)

  2. new ADAMNucleotideContigFragment()

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. def compareTo(arg0: SpecificRecord): Int

    Definition Classes
    SpecificRecordBase → Comparable

  9. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  10. def equals(arg0: Any): Boolean

    Definition Classes
    SpecificRecordBase → AnyRef → Any

  11. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  12. def get(arg0: Int): AnyRef

    Definition Classes
    ADAMNucleotideContigFragment → SpecificRecordBase → IndexedRecord

  13. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  14. def getContig(): ADAMContig

  15. def getDescription(): CharSequence

  16. def getFragmentNumber(): Integer

  17. def getFragmentSequence(): CharSequence

  18. def getFragmentStartPosition(): Long

  19. def getNumberOfFragmentsInContig(): Integer

  20. def getSchema(): Schema

    Definition Classes
    ADAMNucleotideContigFragment → SpecificRecordBase → GenericContainer

  21. def hashCode(): Int

    Definition Classes
    SpecificRecordBase → AnyRef → Any

  22. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  23. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  24. final def notify(): Unit

    Definition Classes
    AnyRef

  25. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  26. def put(arg0: Int, arg1: Any): Unit

    Definition Classes
    ADAMNucleotideContigFragment → SpecificRecordBase → IndexedRecord

  27. def setContig(value: ADAMContig): Unit

  28. def setDescription(value: CharSequence): Unit

  29. def setFragmentNumber(value: Integer): Unit

  30. def setFragmentSequence(value: CharSequence): Unit

  31. def setFragmentStartPosition(value: Long): Unit

  32. def setNumberOfFragmentsInContig(value: Integer): Unit

  33. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  34. def toString(): String

    Definition Classes
    SpecificRecordBase → AnyRef → Any

  35. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  36. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  37. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from SpecificRecordBase

Inherited from Comparable[SpecificRecord]

Inherited from SpecificRecord

Inherited from IndexedRecord

Inherited from GenericContainer

Inherited from AnyRef

Inherited from Any

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