org.bdgenomics.adam.avro

ADAMVariant

class ADAMVariant extends SpecificRecordBase with SpecificRecord

Linear Supertypes
SpecificRecordBase, Comparable[SpecificRecord], SpecificRecord, IndexedRecord, GenericContainer, AnyRef, Any
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Inherited
  1. ADAMVariant
  2. SpecificRecordBase
  3. Comparable
  4. SpecificRecord
  5. IndexedRecord
  6. GenericContainer
  7. AnyRef
  8. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new ADAMVariant(contig: ADAMContig, position: Long, exclusiveEnd: Long, referenceAllele: CharSequence, variantAllele: CharSequence)

  2. new ADAMVariant()

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. def compareTo(arg0: SpecificRecord): Int

    Definition Classes
    SpecificRecordBase → Comparable

  9. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  10. def equals(arg0: Any): Boolean

    Definition Classes
    SpecificRecordBase → AnyRef → Any

  11. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  12. def get(arg0: Int): AnyRef

    Definition Classes
    ADAMVariant → SpecificRecordBase → IndexedRecord

  13. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  14. def getContig(): ADAMContig

  15. def getExclusiveEnd(): Long

  16. def getPosition(): Long

  17. def getReferenceAllele(): CharSequence

  18. def getSchema(): Schema

    Definition Classes
    ADAMVariant → SpecificRecordBase → GenericContainer

  19. def getVariantAllele(): CharSequence

  20. def hashCode(): Int

    Definition Classes
    SpecificRecordBase → AnyRef → Any

  21. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  22. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  23. final def notify(): Unit

    Definition Classes
    AnyRef

  24. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  25. def put(arg0: Int, arg1: Any): Unit

    Definition Classes
    ADAMVariant → SpecificRecordBase → IndexedRecord

  26. def setContig(value: ADAMContig): Unit

  27. def setExclusiveEnd(value: Long): Unit

  28. def setPosition(value: Long): Unit

  29. def setReferenceAllele(value: CharSequence): Unit

  30. def setVariantAllele(value: CharSequence): Unit

  31. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  32. def toString(): String

    Definition Classes
    SpecificRecordBase → AnyRef → Any

  33. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  34. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  35. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from SpecificRecordBase

Inherited from Comparable[SpecificRecord]

Inherited from SpecificRecord

Inherited from IndexedRecord

Inherited from GenericContainer

Inherited from AnyRef

Inherited from Any

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