VariantCallingAnnotations

Value Members

1. final def !=(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

2. final def !=(arg0: Any): Boolean

   Definition Classes

   Any

3. final def ##(): Int

   Definition Classes

   AnyRef → Any

4. final def ==(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

5. final def ==(arg0: Any): Boolean

   Definition Classes

   Any

6. final def asInstanceOf[T0]: T0

   Definition Classes

   Any

7. def clone(): AnyRef

   Attributes

   protected[java.lang]

   Definition Classes

   AnyRef

   Annotations

   @throws( ... )

8. def compareTo(arg0: SpecificRecord): Int

   Definition Classes

   SpecificRecordBase → Comparable

9. final def eq(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

10. def equals(arg0: Any): Boolean

    Definition Classes

    SpecificRecordBase → AnyRef → Any

11. def finalize(): Unit

    Attributes

    protected[java.lang]

    Definition Classes

    AnyRef

    Annotations

    @throws( classOf[java.lang.Throwable] )

12. def get(arg0: Int): AnyRef

    Definition Classes

    VariantCallingAnnotations → SpecificRecordBase → IndexedRecord

13. def getBaseQRankSum(): Float

14. final def getClass(): Class[_]

    Definition Classes

    AnyRef → Any

15. def getClippingRankSum(): Float

16. def getCulprit(): CharSequence

17. def getDownsampled(): Boolean

18. def getFisherStrandBiasPValue(): Float

19. def getHaplotypeScore(): Float

20. def getInbreedingCoefficient(): Float

21. def getMapq0Reads(): Integer

22. def getMqRankSum(): Float

23. def getReadDepth(): Integer

24. def getReadPositionRankSum(): Float

25. def getRmsMapQ(): Float

26. def getSchema(): Schema

    Definition Classes

    VariantCallingAnnotations → SpecificRecordBase → GenericContainer

27. def getUsedForNegativeTrainingSet(): Boolean

28. def getUsedForPositiveTrainingSet(): Boolean

29. def getVariantCallErrorProbability(): Float

30. def getVariantFilters(): List[CharSequence]

31. def getVariantIsPassing(): Boolean

32. def getVariantQualityByDepth(): Float

33. def getVqslod(): Float

34. def hashCode(): Int

    Definition Classes

    SpecificRecordBase → AnyRef → Any

35. final def isInstanceOf[T0]: Boolean

    Definition Classes

    Any

36. final def ne(arg0: AnyRef): Boolean

    Definition Classes

    AnyRef

37. final def notify(): Unit

    Definition Classes

    AnyRef

38. final def notifyAll(): Unit

    Definition Classes

    AnyRef

39. def put(arg0: Int, arg1: Any): Unit

    Definition Classes

    VariantCallingAnnotations → SpecificRecordBase → IndexedRecord

40. def setBaseQRankSum(value: Float): Unit

41. def setClippingRankSum(value: Float): Unit

42. def setCulprit(value: CharSequence): Unit

43. def setDownsampled(value: Boolean): Unit

44. def setFisherStrandBiasPValue(value: Float): Unit

45. def setHaplotypeScore(value: Float): Unit

46. def setInbreedingCoefficient(value: Float): Unit

47. def setMapq0Reads(value: Integer): Unit

48. def setMqRankSum(value: Float): Unit

49. def setReadDepth(value: Integer): Unit

50. def setReadPositionRankSum(value: Float): Unit

51. def setRmsMapQ(value: Float): Unit

52. def setUsedForNegativeTrainingSet(value: Boolean): Unit

53. def setUsedForPositiveTrainingSet(value: Boolean): Unit

54. def setVariantCallErrorProbability(value: Float): Unit

55. def setVariantFilters(value: List[CharSequence]): Unit

56. def setVariantIsPassing(value: Boolean): Unit

57. def setVariantQualityByDepth(value: Float): Unit

58. def setVqslod(value: Float): Unit

59. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes

    AnyRef

60. def toString(): String

    Definition Classes

    SpecificRecordBase → AnyRef → Any

61. final def wait(): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

62. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

63. final def wait(arg0: Long): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )