ADAMGenotype

Value Members

1. final def !=(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

2. final def !=(arg0: Any): Boolean

   Definition Classes

   Any

3. final def ##(): Int

   Definition Classes

   AnyRef → Any

4. final def ==(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

5. final def ==(arg0: Any): Boolean

   Definition Classes

   Any

6. final def asInstanceOf[T0]: T0

   Definition Classes

   Any

7. def clone(): AnyRef

   Attributes

   protected[java.lang]

   Definition Classes

   AnyRef

   Annotations

   @throws( ... )

8. def compareTo(arg0: SpecificRecord): Int

   Definition Classes

   SpecificRecordBase → Comparable

9. final def eq(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

10. def equals(arg0: Any): Boolean

    Definition Classes

    SpecificRecordBase → AnyRef → Any

11. def finalize(): Unit

    Attributes

    protected[java.lang]

    Definition Classes

    AnyRef

    Annotations

    @throws( classOf[java.lang.Throwable] )

12. def get(arg0: Int): AnyRef

    Definition Classes

    ADAMGenotype → SpecificRecordBase → IndexedRecord

13. def getAlleles(): List[ADAMGenotypeAllele]

14. def getAlternateReadDepth(): Integer

15. final def getClass(): Class[_]

    Definition Classes

    AnyRef → Any

16. def getExpectedAlleleDosage(): Float

17. def getGenotypeLikelihoods(): List[Integer]

18. def getGenotypeQuality(): Integer

19. def getIsPhased(): Boolean

20. def getPhaseQuality(): Integer

21. def getPhaseSetId(): Integer

22. def getProcessingDescription(): CharSequence

23. def getReadDepth(): Integer

24. def getReadsMappedForwardStrand(): Integer

25. def getReferenceReadDepth(): Integer

26. def getSampleDescription(): CharSequence

27. def getSampleId(): CharSequence

28. def getSchema(): Schema

    Definition Classes

    ADAMGenotype → SpecificRecordBase → GenericContainer

29. def getSplitFromMultiAllelic(): Boolean

30. def getVariant(): ADAMVariant

31. def getVariantCallingAnnotations(): VariantCallingAnnotations

32. def hashCode(): Int

    Definition Classes

    SpecificRecordBase → AnyRef → Any

33. final def isInstanceOf[T0]: Boolean

    Definition Classes

    Any

34. final def ne(arg0: AnyRef): Boolean

    Definition Classes

    AnyRef

35. final def notify(): Unit

    Definition Classes

    AnyRef

36. final def notifyAll(): Unit

    Definition Classes

    AnyRef

37. def put(arg0: Int, arg1: Any): Unit

    Definition Classes

    ADAMGenotype → SpecificRecordBase → IndexedRecord

38. def setAlleles(value: List[ADAMGenotypeAllele]): Unit

39. def setAlternateReadDepth(value: Integer): Unit

40. def setExpectedAlleleDosage(value: Float): Unit

41. def setGenotypeLikelihoods(value: List[Integer]): Unit

42. def setGenotypeQuality(value: Integer): Unit

43. def setIsPhased(value: Boolean): Unit

44. def setPhaseQuality(value: Integer): Unit

45. def setPhaseSetId(value: Integer): Unit

46. def setProcessingDescription(value: CharSequence): Unit

47. def setReadDepth(value: Integer): Unit

48. def setReadsMappedForwardStrand(value: Integer): Unit

49. def setReferenceReadDepth(value: Integer): Unit

50. def setSampleDescription(value: CharSequence): Unit

51. def setSampleId(value: CharSequence): Unit

52. def setSplitFromMultiAllelic(value: Boolean): Unit

53. def setVariant(value: ADAMVariant): Unit

54. def setVariantCallingAnnotations(value: VariantCallingAnnotations): Unit

55. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes

    AnyRef

56. def toString(): String

    Definition Classes

    SpecificRecordBase → AnyRef → Any

57. final def wait(): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

58. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

59. final def wait(arg0: Long): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )