org.bdgenomics.avocado.util

RewriteHets

object RewriteHets extends Serializable

Rewrites high allelic fraction het genotypes as homozygous alternate calls.

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  6. def apply(rdd: GenotypeRDD, args: RewriteHetsArgs): GenotypeRDD

    Identifies high allelic fraction het calls in an RDD of genotypes and rewrites them as homozygous alt calls.

    Identifies high allelic fraction het calls in an RDD of genotypes and rewrites them as homozygous alt calls.

    rdd

    The RDD of genotypes to filter.

    args

    The arguments to configure the rewriter.

    returns

    Returns a new RDD of genotypes.

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