1. org
   1. org.bdgenomics
      1. org.bdgenomics.avocado
         1. org.bdgenomics.avocado.genotyping
            1. (case class)DiscoveredVariant
            2. (object)
               DiscoverVariants
            3. (object)
               JointAnnotatorCaller
            4. (object)
               SquareOffReferenceModel
            5. (object)
               TrioCaller
         2. org.bdgenomics.avocado.models
            1. (case class)Clipped
            2. (case class)Deletion
            3. (case class)Insertion
            4. (case class)Match
            5. (object)(case class)Observation
            6. (object)(trait)ObservationOperator
         3. org.bdgenomics.avocado.realigner
            1. (object)
               Aligner
            2. (object)
               Realigner
         4. org.bdgenomics.avocado.serialization
            1. (class)AvocadoKryoRegistrator
         5. org.bdgenomics.avocado.util
            1. (class)ForestSerializer
            2. (object)
               LogPhred
            3. (object)
               LogUtils
            4. (object)
               PrefilterReads
            5. (trait)PrefilterReadsArgs
            6. (object)
               RewriteHets
            7. (object)
               TreeRegionJoin