cli

Type Members

1. final class About extends AnyRef

2. class BiallelicGenotyper extends BDGSparkCommand[BiallelicGenotyperArgs]

3. class BiallelicGenotyperArgs extends Args4jBase with ADAMSaveAnyArgs with ParquetArgs with PrefilterReadsArgs with HardFilterGenotypesArgs with RewriteHetsArgs

4. class DiscoverVariants extends BDGSparkCommand[DiscoverVariantsArgs]

5. class DiscoverVariantsArgs extends Args4jBase

6. class Jointer extends BDGSparkCommand[JointerArgs]

7. class JointerArgs extends Args4jBase with ADAMSaveAnyArgs with ParquetArgs

8. class MergeDiscovered extends BDGSparkCommand[MergeDiscoveredArgs]

9. class MergeDiscoveredArgs extends Args4jBase

10. class Reassemble extends BDGSparkCommand[ReassembleArgs]

11. class ReassembleArgs extends Args4jBase with ADAMSaveAnyArgs with ParquetArgs

12. class TrioGenotyper extends BDGSparkCommand[TrioGenotyperArgs]

13. class TrioGenotyperArgs extends Args4jBase with ADAMSaveAnyArgs with ParquetArgs with PrefilterReadsArgs with HardFilterGenotypesArgs