Realigner

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30. def realign(reads: AlignmentRecordRDD, kmerLength: Int): AlignmentRecordRDD

    Realigns a set of reads against the reference genome.

    Realigns a set of reads against the reference genome.

    reads

    Reads to realign.

    kmerLength

    The length k of the k-mers.

    returns

    Returns the realigned reads.

31. final def synchronized[T0](arg0: ⇒ T0): T0

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