LogPhred

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1. final def !=(arg0: AnyRef): Boolean

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2. final def !=(arg0: Any): Boolean

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3. final def ##(): Int

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4. final def ==(arg0: AnyRef): Boolean

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5. final def ==(arg0: Any): Boolean

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6. final def asInstanceOf[T0]: T0

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7. def clone(): AnyRef

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8. final def eq(arg0: AnyRef): Boolean

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9. def equals(arg0: Any): Boolean

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10. def finalize(): Unit

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11. final def getClass(): Class[_]

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12. def hashCode(): Int

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13. final def isInstanceOf[T0]: Boolean

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14. def logErrorToPhred(l: Double): Double

    Conversion between log _error_ probabilities and Phred scores.

    Conversion between log _error_ probabilities and Phred scores.

    Q = -10 log_{10} p

    If l = ln p, then we just need to do a log base conversion.

    l

    Log error probability.

    returns

    Returns the Phred score corresponding to that log probability.

    Note

    Just remember kids: if you want to live a happy, fulfilling life, don't use Phred!

15. final def ne(arg0: AnyRef): Boolean

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16. final def notify(): Unit

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17. final def notifyAll(): Unit

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18. final def synchronized[T0](arg0: ⇒ T0): T0

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19. def toString(): String

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20. final def wait(): Unit

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21. final def wait(arg0: Long, arg1: Int): Unit

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22. final def wait(arg0: Long): Unit

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