org.bdgenomics.avocado.cli

JointerArgs

class JointerArgs extends Args4jBase with ADAMSaveAnyArgs with ParquetArgs

Linear Supertypes
ParquetArgs, ADAMSaveAnyArgs, SaveArgs, ParquetRDDArgs, Args4jBase, AnyRef, Any
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Inherited
  1. JointerArgs
  2. ParquetArgs
  3. ADAMSaveAnyArgs
  4. SaveArgs
  5. ParquetRDDArgs
  6. Args4jBase
  7. AnyRef
  8. Any
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Visibility
  1. Public
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Instance Constructors

  1. new JointerArgs()

Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  5. var asSingleFile: Boolean

    Definition Classes
    JointerArgs → ADAMSaveAnyArgs

  6. var blockSize: Int

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. var coalescePartitions: Int

  9. var compressionCodec: CompressionCodecName

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  10. var deferMerging: Boolean

    Definition Classes
    JointerArgs → ADAMSaveAnyArgs

  11. var disableDictionaryEncoding: Boolean

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  12. var disableFastConcat: Boolean

    Definition Classes
    JointerArgs → ADAMSaveAnyArgs

  13. var doPrintUsage: Boolean

    Definition Classes
    Args4jBase

  14. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  15. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  16. var extractOnly: Boolean

  17. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  18. var fromGvcf: Boolean

  19. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  20. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  21. var inputPath: String

  22. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  23. var logLevel: String

    Definition Classes
    ParquetArgs

  24. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  25. final def notify(): Unit

    Definition Classes
    AnyRef

  26. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  27. var outputPath: String

    Definition Classes
    JointerArgs → SaveArgs

  28. var pageSize: Int

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  29. var printMetrics: Boolean

    Definition Classes
    Args4jBase

  30. var sortFastqOutput: Boolean

    Definition Classes
    JointerArgs → ADAMSaveAnyArgs

  31. var stringency: String

  32. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  33. def toString(): String

    Definition Classes
    AnyRef → Any

  34. var variantsToExtract: String

  35. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  36. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  37. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from ParquetArgs

Inherited from ADAMSaveAnyArgs

Inherited from SaveArgs

Inherited from ParquetRDDArgs

Inherited from Args4jBase

Inherited from AnyRef

Inherited from Any

Ungrouped