org.bdgenomics.avocado

cli

package cli

Visibility
  1. Public
  2. All

Type Members

  1. final class About extends AnyRef

  2. class BiallelicGenotyper extends BDGSparkCommand[BiallelicGenotyperArgs]

  3. class BiallelicGenotyperArgs extends Args4jBase with ADAMSaveAnyArgs with ParquetArgs with PrefilterReadsArgs with HardFilterGenotypesArgs with RewriteHetsArgs

  4. class DiscoverVariants extends BDGSparkCommand[DiscoverVariantsArgs]

  5. class DiscoverVariantsArgs extends Args4jBase

  6. class Jointer extends BDGSparkCommand[JointerArgs]

  7. class JointerArgs extends Args4jBase with ADAMSaveAnyArgs with ParquetArgs

  8. class MergeDiscovered extends BDGSparkCommand[MergeDiscoveredArgs]

  9. class MergeDiscoveredArgs extends Args4jBase

  10. class Reassemble extends BDGSparkCommand[ReassembleArgs]

  11. class ReassembleArgs extends Args4jBase with ADAMSaveAnyArgs with ParquetArgs

  12. class TrioGenotyper extends BDGSparkCommand[TrioGenotyperArgs]

  13. class TrioGenotyperArgs extends Args4jBase with ADAMSaveAnyArgs with ParquetArgs with PrefilterReadsArgs with HardFilterGenotypesArgs

Value Members

  1. object BiallelicGenotyper extends BDGCommandCompanion

  2. object DiscoverVariants extends BDGCommandCompanion

  3. object Jointer extends BDGCommandCompanion

  4. object MergeDiscovered extends BDGCommandCompanion

  5. object Reassemble extends BDGCommandCompanion

  6. object TrioGenotyper extends BDGCommandCompanion

Ungrouped