org.bdgenomics.avocado.models

Deletion

case class Deletion(basesDeleted: String) extends ObservationOperator with Product with Serializable

A block representing a deletion from the reference.

basesDeleted

The bases deleted from the reference.

Linear Supertypes
Serializable, Serializable, Product, Equals, ObservationOperator, AnyRef, Any
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Inherited
  1. Deletion
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. ObservationOperator
  7. AnyRef
  8. Any
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Instance Constructors

  1. new Deletion(basesDeleted: String)

    basesDeleted

    The bases deleted from the reference.

Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  5. val basesDeleted: String

    The bases deleted from the reference.

  6. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  7. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  8. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  9. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  10. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  11. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  12. def nonEmpty: Boolean

    returns

    True if this block has non-zero length.

    Definition Classes
    ObservationOperator

  13. final def notify(): Unit

    Definition Classes
    AnyRef

  14. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  15. val size: Int

    The number of bases deleted from the reference.

    The number of bases deleted from the reference.

    Definition Classes
    Deletion → ObservationOperator

  16. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  17. def toString(): String

    returns

    Returns "<length>D".

    Definition Classes
    Deletion → AnyRef → Any

  18. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  19. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  20. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from ObservationOperator

Inherited from AnyRef

Inherited from Any

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