org.bdgenomics.avocado.models

ObservationOperator

sealed trait ObservationOperator extends AnyRef

A trait that implements an alignment operator.

These operators represent a limited subset of the CIGAR operators:

* Alignment Match (M --> X/=) * Insertion (I) * Deletion (D) * Clip (S/H)

Linear Supertypes
AnyRef, Any
Known Subclasses
Clipped, Deletion, Insertion, Match
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Abstract Value Members

  1. abstract val size: Int

    The length of this alignment block.

Concrete Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

    Definition Classes
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  4. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  5. def clone(): AnyRef

    Attributes
    protected[java.lang]
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    Annotations
    @throws( ... )

  6. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  7. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  8. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  9. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  10. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  11. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  12. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  13. def nonEmpty: Boolean

    returns

    True if this block has non-zero length.

  14. final def notify(): Unit

    Definition Classes
    AnyRef

  15. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  16. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  17. def toString(): String

    Definition Classes
    AnyRef → Any

  18. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  19. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  20. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
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    @throws( ... )

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