org.bdgenomics.avocado

util

package util

Visibility
  1. Public
  2. All

Type Members

  1. class ForestSerializer[T, TS <: Serializer[T]] extends Serializer[Forest[T]]

  2. trait PrefilterReadsArgs extends Serializable

Value Members

  1. object LogPhred

  2. object LogUtils extends Serializable

  3. object PrefilterReads extends Serializable

    Reifies an input AlignmentRecordRDD down to the contigs and reads we want to genotype.

  4. object RewriteHets extends Serializable

    Rewrites high allelic fraction het genotypes as homozygous alternate calls.

  5. object TreeRegionJoin extends Serializable

    Implements a shuffle free broadcast region join.

    Implements a shuffle free broadcast region join.

    The broadcast values are stored in a sorted array. It was going to be an ensemble of interval trees, but, that didn't work out.

Ungrouped