org.bdgenomics.cannoli.cli

BedtoolsArgs

class BedtoolsArgs extends Args4jBase with ADAMSaveAnyArgs with ParquetArgs

Linear Supertypes
ParquetArgs, ADAMSaveAnyArgs, SaveArgs, ParquetRDDArgs, Args4jBase, AnyRef, Any
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Inherited
  1. BedtoolsArgs
  2. ParquetArgs
  3. ADAMSaveAnyArgs
  4. SaveArgs
  5. ParquetRDDArgs
  6. Args4jBase
  7. AnyRef
  8. Any
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Instance Constructors

  1. new BedtoolsArgs()

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. var a: String

  7. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  8. var asSingleFile: Boolean

    Definition Classes
    BedtoolsArgs → ADAMSaveAnyArgs

  9. var b: String

  10. var bedtoolsPath: String

  11. var blockSize: Int

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  12. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  13. var compressionCodec: CompressionCodecName

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  14. var deferMerging: Boolean

    Definition Classes
    BedtoolsArgs → ADAMSaveAnyArgs

  15. var disableDictionaryEncoding: Boolean

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  16. var disableFastConcat: Boolean

    Definition Classes
    BedtoolsArgs → ADAMSaveAnyArgs

  17. var doPrintUsage: Boolean

    Definition Classes
    Args4jBase

  18. var dockerImage: String

  19. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  20. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  21. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  22. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  23. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  24. var inputPath: String

  25. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  26. var logLevel: String

    Definition Classes
    ParquetArgs

  27. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  28. final def notify(): Unit

    Definition Classes
    AnyRef

  29. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  30. var outputPath: String

    Definition Classes
    BedtoolsArgs → SaveArgs

  31. var pageSize: Int

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  32. var printMetrics: Boolean

    Definition Classes
    Args4jBase

  33. var sortFastqOutput: Boolean

    Definition Classes
    BedtoolsArgs → ADAMSaveAnyArgs

  34. var sorted: Boolean

  35. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  36. def toString(): String

    Definition Classes
    AnyRef → Any

  37. var useDocker: Boolean

  38. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  39. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  40. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from ParquetArgs

Inherited from ADAMSaveAnyArgs

Inherited from SaveArgs

Inherited from ParquetRDDArgs

Inherited from Args4jBase

Inherited from AnyRef

Inherited from Any

Ungrouped