Package org.bdgenomics.convert.ga4gh

Class BdgenomicsGenotypeToGa4ghCall

java.lang.Object

org.bdgenomics.convert.AbstractConverter<org.bdgenomics.formats.avro.Genotype,ga4gh.Variants.Call>

org.bdgenomics.convert.ga4gh.BdgenomicsGenotypeToGa4ghCall

All Implemented Interfaces:

Serializable, org.bdgenomics.convert.Converter<org.bdgenomics.formats.avro.Genotype,ga4gh.Variants.Call>

@Immutable
public class BdgenomicsGenotypeToGa4ghCall
extends org.bdgenomics.convert.AbstractConverter<org.bdgenomics.formats.avro.Genotype,ga4gh.Variants.Call>

Convert bdg-formats Genotype to GA4GH Call.

See Also:

Serialized Form

Method Summary

Modifier and Type	Method	Description
ga4gh.Variants.Call	convert(org.bdgenomics.formats.avro.Genotype genotype, org.bdgenomics.convert.ConversionStringency stringency, org.slf4j.Logger logger)

Methods inherited from class org.bdgenomics.convert.AbstractConverter

checkNotNull, checkNotNull, checkNotNull, getSourceClass, getTargetClass, warnOrThrow

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

convert

public ga4gh.Variants.Call convert(org.bdgenomics.formats.avro.Genotype genotype,
                                   org.bdgenomics.convert.ConversionStringency stringency,
                                   org.slf4j.Logger logger)
                            throws org.bdgenomics.convert.ConversionException

Throws:

org.bdgenomics.convert.ConversionException