Package org.bdgenomics.convert.ga4gh

Class BdgenomicsVariantToGa4ghVariant

java.lang.Object

org.bdgenomics.convert.AbstractConverter<org.bdgenomics.formats.avro.Variant,ga4gh.Variants.Variant>

org.bdgenomics.convert.ga4gh.BdgenomicsVariantToGa4ghVariant

All Implemented Interfaces:

Serializable, org.bdgenomics.convert.Converter<org.bdgenomics.formats.avro.Variant,ga4gh.Variants.Variant>

@Immutable
public class BdgenomicsVariantToGa4ghVariant
extends org.bdgenomics.convert.AbstractConverter<org.bdgenomics.formats.avro.Variant,ga4gh.Variants.Variant>

Convert bdg-formats Variant to GA4GH Variant.

See Also:

Serialized Form

Method Summary

Modifier and Type	Method	Description
ga4gh.Variants.Variant	convert(org.bdgenomics.formats.avro.Variant variant, org.bdgenomics.convert.ConversionStringency stringency, org.slf4j.Logger logger)

Methods inherited from class org.bdgenomics.convert.AbstractConverter

checkNotNull, checkNotNull, checkNotNull, getSourceClass, getTargetClass, warnOrThrow

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

convert

public ga4gh.Variants.Variant convert(org.bdgenomics.formats.avro.Variant variant,
                                      org.bdgenomics.convert.ConversionStringency stringency,
                                      org.slf4j.Logger logger)
                               throws org.bdgenomics.convert.ConversionException

Throws:

org.bdgenomics.convert.ConversionException