org.bdgenomics.convert.htsjdk

Interface VariantContextToVariantsFactory

public interface VariantContextToVariantsFactory

Factory for creating VariantContext to list of Variants converters, which require late binding for a VCFHeader.

Method Summary

Modifier and Type	Method and Description
Converter<htsjdk.variant.variantcontext.VariantContext,List<org.bdgenomics.formats.avro.Variant>>	create(htsjdk.variant.vcf.VCFHeader header) Create a new VariantContext to list of Variants converter with the specified header.

Method Detail

create

Converter<htsjdk.variant.variantcontext.VariantContext,List<org.bdgenomics.formats.avro.Variant>> create(htsjdk.variant.vcf.VCFHeader header)

Create a new VariantContext to list of Variants converter with the specified header.

Parameters:

header - header, must not be null

Returns:

a new VariantContext to list of Variants converter with the specified header