org.bdgenomics.convert.htsjdk

Interfaces

• AlignmentToSamRecordFactory
• GenotypesToVariantContextFactory
• VariantContextToGenotypesFactory
• VariantContextToVariantsFactory
• VariantToVariantContextFactory

Classes

• AlignmentToSamRecord
• GenotypesToVariantContext
• HtsjdkModule
• SamHeaderToProcessingSteps
• SamHeaderToReadGroups
• SamHeaderToReferences
• SamProgramRecordToProcessingStep
• SamReadGroupRecordToReadGroup
• SamRecordToAlignment
• SamSequenceRecordToReference
• VariantContextToGenotypes
• VariantContextToVariants
• VariantToVariantContext
• VcfHeaderToReferences
• VcfHeaderToSamples
• VcfHeaderToVcfHeaderLines