Package org.bdgenomics.convert.htsjdk

Interface GenotypesToVariantContextFactory

  • public interface GenotypesToVariantContextFactory
    Factory for creating list of Genotypes to VariantContext converters, which require late binding for a VCFHeader.

    • Method Summary

      All Methods Instance Methods Abstract Methods 
      Modifier and Type Method Description
      Converter<List<org.bdgenomics.formats.avro.Genotype>,​htsjdk.variant.variantcontext.VariantContext> create​(htsjdk.variant.vcf.VCFHeader header)
      Create a new list of Genotypes to VariantContext converter with the specified header.

    • Method Detail

      • create

        Converter<List<org.bdgenomics.formats.avro.Genotype>,​htsjdk.variant.variantcontext.VariantContext> create​(htsjdk.variant.vcf.VCFHeader header)
        Create a new list of Genotypes to VariantContext converter with the specified header.
        Parameters:
        header - header, must not be null
        Returns:
        a new list of Genotypes to VariantContext converter with the specified header