Package org.bdgenomics.convert.htsjdk

Interface VariantContextToGenotypesFactory

  • public interface VariantContextToGenotypesFactory
    Factory for creating VariantContext to list of Genotypes converters, which require late binding for a VCFHeader.

    • Method Summary

      All Methods Instance Methods Abstract Methods 
      Modifier and Type Method Description
      Converter<htsjdk.variant.variantcontext.VariantContext,​List<org.bdgenomics.formats.avro.Genotype>> create​(htsjdk.variant.vcf.VCFHeader header)
      Create a new VariantContext to list of Genotypes converter with the specified header.

    • Method Detail

      • create

        Converter<htsjdk.variant.variantcontext.VariantContext,​List<org.bdgenomics.formats.avro.Genotype>> create​(htsjdk.variant.vcf.VCFHeader header)
        Create a new VariantContext to list of Genotypes converter with the specified header.
        Parameters:
        header - header, must not be null
        Returns:
        a new VariantContext to list of Genotypes converter with the specified header