Package org.bdgenomics.convert.htsjdk

Interface VariantToVariantContextFactory

  • public interface VariantToVariantContextFactory
    Factory for creating Variant to VariantContext converters, which require late binding for a VCFHeader.

    • Method Summary

      All Methods Instance Methods Abstract Methods 
      Modifier and Type Method Description
      Converter<org.bdgenomics.formats.avro.Variant,​htsjdk.variant.variantcontext.VariantContext> create​(htsjdk.variant.vcf.VCFHeader header)
      Create a new Variant to VariantContext converter with the specified header.

    • Method Detail

      • create

        Converter<org.bdgenomics.formats.avro.Variant,​htsjdk.variant.variantcontext.VariantContext> create​(htsjdk.variant.vcf.VCFHeader header)
        Create a new Variant to VariantContext converter with the specified header.
        Parameters:
        header - header, must not be null
        Returns:
        a new Variant to VariantContext converter with the specified header