Package org.bdgenomics.convert.htsjdk

Class VcfHeaderToVcfHeaderLines

java.lang.Object

org.bdgenomics.convert.AbstractConverter<htsjdk.variant.vcf.VCFHeader,List<htsjdk.variant.vcf.VCFHeaderLine>>

org.bdgenomics.convert.htsjdk.VcfHeaderToVcfHeaderLines

All Implemented Interfaces:

Serializable, Converter<htsjdk.variant.vcf.VCFHeader,List<htsjdk.variant.vcf.VCFHeaderLine>>

public final class VcfHeaderToVcfHeaderLines
extends AbstractConverter<htsjdk.variant.vcf.VCFHeader,List<htsjdk.variant.vcf.VCFHeaderLine>>

Convert a VCFHeader to a list of VCFHeaderLines.

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor	Description
VcfHeaderToVcfHeaderLines()	Create a new VCFHeader to a list of VCFHeaderLines converter.

Method Summary

Modifier and Type	Method	Description
List<htsjdk.variant.vcf.VCFHeaderLine>	convert(htsjdk.variant.vcf.VCFHeader header, ConversionStringency stringency, org.slf4j.Logger logger)

Methods inherited from class org.bdgenomics.convert.AbstractConverter

checkNotNull, checkNotNull, checkNotNull, getSourceClass, getTargetClass, warnOrThrow

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

VcfHeaderToVcfHeaderLines

public VcfHeaderToVcfHeaderLines()

Create a new VCFHeader to a list of VCFHeaderLines converter.

Method Detail

convert

public List<htsjdk.variant.vcf.VCFHeaderLine> convert(htsjdk.variant.vcf.VCFHeader header,
                                                      ConversionStringency stringency,
                                                      org.slf4j.Logger logger)
                                               throws ConversionException

Throws:

ConversionException