Hierarchy For All Packages

Package Hierarchies:

• org.bdgenomics.convert.htsjdk

Class Hierarchy

• java.lang.Object
  • org.bdgenomics.convert.AbstractConverter<S,T> (implements org.bdgenomics.convert.Converter<S,T>, java.io.Serializable)
    • org.bdgenomics.convert.htsjdk.AlignmentToSamRecord
    • org.bdgenomics.convert.htsjdk.GenotypesToVariantContext
    • org.bdgenomics.convert.htsjdk.SamHeaderToProcessingSteps
    • org.bdgenomics.convert.htsjdk.SamHeaderToReadGroups
    • org.bdgenomics.convert.htsjdk.SamHeaderToReferences
    • org.bdgenomics.convert.htsjdk.SamProgramRecordToProcessingStep
    • org.bdgenomics.convert.htsjdk.SamReadGroupRecordToReadGroup
    • org.bdgenomics.convert.htsjdk.SamRecordToAlignment
    • org.bdgenomics.convert.htsjdk.SamSequenceRecordToReference
    • org.bdgenomics.convert.htsjdk.VariantContextToGenotypes
    • org.bdgenomics.convert.htsjdk.VariantContextToVariants
    • org.bdgenomics.convert.htsjdk.VariantToVariantContext
    • org.bdgenomics.convert.htsjdk.VcfHeaderToReferences
    • org.bdgenomics.convert.htsjdk.VcfHeaderToSamples
    • org.bdgenomics.convert.htsjdk.VcfHeaderToVcfHeaderLines
  • com.google.inject.AbstractModule (implements com.google.inject.Module)
    • org.bdgenomics.convert.htsjdk.HtsjdkModule

Interface Hierarchy

• org.bdgenomics.convert.htsjdk.AlignmentToSamRecordFactory
• org.bdgenomics.convert.htsjdk.GenotypesToVariantContextFactory
• org.bdgenomics.convert.htsjdk.VariantContextToGenotypesFactory
• org.bdgenomics.convert.htsjdk.VariantContextToVariantsFactory
• org.bdgenomics.convert.htsjdk.VariantToVariantContextFactory