org.bdgenomics.convert.htsjdk

Interface VariantToVariantContextFactory

public interface VariantToVariantContextFactory

Factory for creating Variant to VariantContext converters, which require late binding for a VCFHeader.

Method Summary

Modifier and Type	Method and Description
Converter<org.bdgenomics.formats.avro.Variant,htsjdk.variant.variantcontext.VariantContext>	create(htsjdk.variant.vcf.VCFHeader header) Create a new Variant to VariantContext converter with the specified header.

Method Detail

create

Converter<org.bdgenomics.formats.avro.Variant,htsjdk.variant.variantcontext.VariantContext> create(htsjdk.variant.vcf.VCFHeader header)

Create a new Variant to VariantContext converter with the specified header.

Parameters:

header - header, must not be null

Returns:

a new Variant to VariantContext converter with the specified header