org.bdgenomics.convert.htsjdk

Class VcfHeaderToSamples

java.lang.Object

org.bdgenomics.convert.AbstractConverter<htsjdk.variant.vcf.VCFHeader,List<org.bdgenomics.formats.avro.Sample>>

org.bdgenomics.convert.htsjdk.VcfHeaderToSamples

All Implemented Interfaces:

Serializable, Converter<htsjdk.variant.vcf.VCFHeader,List<org.bdgenomics.formats.avro.Sample>>

public final class VcfHeaderToSamples
extends AbstractConverter<htsjdk.variant.vcf.VCFHeader,List<org.bdgenomics.formats.avro.Sample>>

Convert a VCFHeader to a list of Samples.

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
VcfHeaderToSamples() Create a new VCFHeader to a list of Samples converter.

Method Summary

Modifier and Type	Method and Description
List<org.bdgenomics.formats.avro.Sample>	convert(htsjdk.variant.vcf.VCFHeader header, ConversionStringency stringency, org.slf4j.Logger logger)

Methods inherited from class org.bdgenomics.convert.AbstractConverter

checkNotNull, checkNotNull, checkNotNull, getSourceClass, getTargetClass, warnOrThrow

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

VcfHeaderToSamples

public VcfHeaderToSamples()

Create a new VCFHeader to a list of Samples converter.

Method Detail

convert

public List<org.bdgenomics.formats.avro.Sample> convert(htsjdk.variant.vcf.VCFHeader header,
                                                        ConversionStringency stringency,
                                                        org.slf4j.Logger logger)
                                                 throws ConversionException

Throws:

ConversionException