All Classes
AlignmentToSamRecord
AlignmentToSamRecordFactory
GenotypesToVariantContext
GenotypesToVariantContextFactory
HtsjdkModule
SamHeaderToProcessingSteps
SamHeaderToReadGroups
SamHeaderToReferences
SamProgramRecordToProcessingStep
SamReadGroupRecordToReadGroup
SamRecordToAlignment
SamSequenceRecordToReference
VariantContextToGenotypes
VariantContextToGenotypesFactory
VariantContextToVariants
VariantContextToVariantsFactory
VariantToVariantContext
VariantToVariantContextFactory
VcfHeaderToReferences
VcfHeaderToSamples
VcfHeaderToVcfHeaderLines