org.bdgenomics.convert.htsjdk

Interface GenotypesToVariantContextFactory

public interface GenotypesToVariantContextFactory

Factory for creating list of Genotypes to VariantContext converters, which require late binding for a VCFHeader.

Method Summary

Modifier and Type	Method and Description
Converter<List<org.bdgenomics.formats.avro.Genotype>,htsjdk.variant.variantcontext.VariantContext>	create(htsjdk.variant.vcf.VCFHeader header) Create a new list of Genotypes to VariantContext converter with the specified header.

Method Detail

create

Converter<List<org.bdgenomics.formats.avro.Genotype>,htsjdk.variant.variantcontext.VariantContext> create(htsjdk.variant.vcf.VCFHeader header)

Create a new list of Genotypes to VariantContext converter with the specified header.

Parameters:

header - header, must not be null

Returns:

a new list of Genotypes to VariantContext converter with the specified header