Uses of Class org.biopax.paxtools.normalizer.ConfigurableIDFetcher (BioPAX Normalizer 6.0.0 API)

Uses of ConfigurableIDFetcher in org.biopax.paxtools.normalizer

Methods in org.biopax.paxtools.normalizer that return ConfigurableIDFetcher

Modifier and Type

Method

Description

ConfigurableIDFetcher

ConfigurableIDFetcher.chemDbStartsWithOrEquals(String dbStartsWithOrEquals)

Set to prefer collecting chemical IDs of such Xrefs where the small molecules db starts with or equals given string, ignoring case.

ConfigurableIDFetcher

ConfigurableIDFetcher.seqDbStartsWithOrEquals(String dbStartsWithOrEquals)

Set to prefer collecting gene/sequence IDs of such Xrefs where the db starts with or equals given string, ignoring case.

ConfigurableIDFetcher

ConfigurableIDFetcher.useNameWhenNoDbMatch(boolean useNameWhenNoDbMatch)

Set the flag to use the entity reference's names when no desired ID type can be found (none of xref.db matched before, or there were no xrefs at all).