org.biopax.paxtools.pattern

Class MappedConst

java.lang.Object

org.biopax.paxtools.pattern.MappedConst

All Implemented Interfaces:

Constraint

public class MappedConst
extends Object
implements Constraint

This is a mapping from a constraint to the elements in a match.

Author:

Ozgun Babur

Constructor Summary

Constructors

Constructor and Description
MappedConst(Constraint constr, int... inds) Constructor with the constraint and the index mapping.

Method Summary

Modifier and Type	Method and Description
boolean	canGenerate() Can generate only if the wrapped constraint is generative.
Collection<BioPAXElement>	generate(Match match, int... outer) Calls generate method of the constraint with index translation.
Constraint	getConstr() Getter for the constraint.
int[]	getInds() Getter for the mapped indices.
int	getMaxInd() Gets the maximum index.
int	getVariableSize() Gets variable size of the wrapped constraint.
boolean	satisfies(Match match, int... outer) Directs to satisfies method of the wrapped constraint with index translation.
protected int[]	translate(int[] outer) This methods translates the indexes of outer constraint, to this inner constraint.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MappedConst

public MappedConst(Constraint constr,
                   int... inds)

Constructor with the constraint and the index mapping.

Parameters:

constr - constraint to map

inds - mapped indexes

Method Detail

getConstr

public Constraint getConstr()

Getter for the constraint.

Returns:

the wrapped constraint

getInds

public int[] getInds()

Getter for the mapped indices.

Returns:

mapped indices

getMaxInd

public int getMaxInd()

Gets the maximum index.

Returns:

maximum index

translate

protected int[] translate(int[] outer)

This methods translates the indexes of outer constraint, to this inner constraint.

Parameters:

outer - mapped indices for the outer constraints

Returns:

translated indices

canGenerate

public boolean canGenerate()

Can generate only if the wrapped constraint is generative.

Specified by:

canGenerate in interface Constraint

Returns:

if the wrapped constraint is generative

generate

public Collection<BioPAXElement> generate(Match match,
                                          int... outer)

Calls generate method of the constraint with index translation.

Specified by:

generate in interface Constraint

Parameters:

match - current pattern match

outer - untranslated indices

Returns:

generated satisfying elements

satisfies

public boolean satisfies(Match match,
                         int... outer)

Directs to satisfies method of the wrapped constraint with index translation.

Specified by:

satisfies in interface Constraint

Parameters:

match - current pattern match

outer - untranslated indices

Returns:

true if the constraint is satisfied

getVariableSize

public int getVariableSize()

Gets variable size of the wrapped constraint.

Specified by:

getVariableSize in interface Constraint

Returns:

variable size of the wrapped constraint