org.biopax.paxtools.pattern.constraint

Class NOT

java.lang.Object

org.biopax.paxtools.pattern.constraint.ConstraintAdapter

org.biopax.paxtools.pattern.constraint.NOT

All Implemented Interfaces:

Constraint

public class NOT
extends ConstraintAdapter

Negation of a constraint. This is not generative.

Author:

Ozgun Babur

Field Summary

Fields inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

blacklist, size

Constructor Summary

Constructors

Constructor and Description
NOT(Constraint con) Constructor with the wrapped constraint.

Method Summary

Modifier and Type	Method and Description
int	getVariableSize() Size is equal to the of the negated constraint
boolean	satisfies(Match match, int... ind) Negates the satisfies value of the wrapped constraint.

Methods inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

assertIndLength, canGenerate, convertStepDirection, findDirectionInCatalysis, findDirectionInPathways, generate, getCatalysisDirection, getControlChain, getConvParticipants, getDirection, getDirection, getDirection, getDirection, setSize

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NOT

public NOT(Constraint con)

Constructor with the wrapped constraint.

Parameters:

con - constraint to negate

Method Detail

getVariableSize

public int getVariableSize()

Size is equal to the of the negated constraint

Specified by:

getVariableSize in interface Constraint

Overrides:

getVariableSize in class ConstraintAdapter

Returns:

size of the wrapped constraint

satisfies

public boolean satisfies(Match match,
                         int... ind)

Negates the satisfies value of the wrapped constraint.

Specified by:

satisfies in interface Constraint

Overrides:

satisfies in class ConstraintAdapter

Parameters:

match - current pattern match

ind - mapped indices

Returns:

negated value