org.biopax.paxtools.pattern.constraint

Class NonUbique

java.lang.Object

org.biopax.paxtools.pattern.constraint.ConstraintAdapter

org.biopax.paxtools.pattern.constraint.NonUbique

All Implemented Interfaces:

Constraint

public class NonUbique
extends ConstraintAdapter

This is a non-generative constraint that checks if the small molecule is ubiquitous in any context. Var0 - PhysicalEntity

Author:

Ozgun Babur

Field Summary

Fields inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

blacklist, size

Constructor Summary

Constructors

Constructor and Description
NonUbique(Blacklist blacklist)

Method Summary

Modifier and Type	Method and Description
boolean	satisfies(Match match, int... ind) Use this method only if constraint canGenerate, and satisfaction criteria is that simple.

Methods inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

assertIndLength, canGenerate, convertStepDirection, findDirectionInCatalysis, findDirectionInPathways, generate, getCatalysisDirection, getControlChain, getConvParticipants, getDirection, getDirection, getDirection, getDirection, getVariableSize, setSize

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NonUbique

public NonUbique(Blacklist blacklist)

Method Detail

satisfies

public boolean satisfies(Match match,
                         int... ind)

Description copied from class: ConstraintAdapter

Use this method only if constraint canGenerate, and satisfaction criteria is that simple.

Specified by:

satisfies in interface Constraint

Overrides:

satisfies in class ConstraintAdapter

Parameters:

match - current pattern match

ind - mapped indices

Returns:

true if the match satisfies this constraint