org.biopax.paxtools.pattern.constraint

Class OR

java.lang.Object

org.biopax.paxtools.pattern.constraint.ConstraintAdapter

org.biopax.paxtools.pattern.constraint.OR

All Implemented Interfaces:

Constraint

Direct Known Subclasses:

AND, MultiPathConstraint, XOR

public class OR
extends ConstraintAdapter

Logical OR of several constraints. Each constraint should have the same variable size and should be able to process same variables at the same order. Constraints should be all generative or all non-generative, and they cannot mix.

Author:

Ozgun Babur

Field Summary

Fields inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

blacklist, size

Constructor Summary

Constructors

Constructor and Description
OR(MappedConst... con) Constructor with the array of mapped constraints.

Method Summary

Modifier and Type	Method and Description
boolean	canGenerate() Can generate only if all of the wrapped constraints are generative.
Collection<BioPAXElement>	generate(Match match, int... ind) Gets the intersection of the generated values of wrapped constraints.
int	getVariableSize() Checks the inner mapping of the wrapped constraints and figures the size.
protected int	max(int[] v) Gets the max value.
boolean	satisfies(Match match, int... ind) Checks if any of the wrapped constraints satisfy.

Methods inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

assertIndLength, convertStepDirection, findDirectionInCatalysis, findDirectionInPathways, getCatalysisDirection, getControlChain, getConvParticipants, getDirection, getDirection, getDirection, getDirection, setSize

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OR

public OR(MappedConst... con)

Constructor with the array of mapped constraints.

Parameters:

con - wrapped constraints

Method Detail

satisfies

public boolean satisfies(Match match,
                         int... ind)

Checks if any of the wrapped constraints satisfy.

Specified by:

satisfies in interface Constraint

Overrides:

satisfies in class ConstraintAdapter

Parameters:

match - current pattern match

ind - mapped indices

Returns:

true if any of the wrapped constraints satisfy

canGenerate

public boolean canGenerate()

Can generate only if all of the wrapped constraints are generative.

Specified by:

canGenerate in interface Constraint

Overrides:

canGenerate in class ConstraintAdapter

Returns:

true if none of the wrapped constraints are non-generative

getVariableSize

public int getVariableSize()

Checks the inner mapping of the wrapped constraints and figures the size.

Specified by:

getVariableSize in interface Constraint

Overrides:

getVariableSize in class ConstraintAdapter

Returns:

the size

max

protected int max(int[] v)

Gets the max value.

Parameters:

v - array to check

Returns:

max value

generate

public Collection<BioPAXElement> generate(Match match,
                                          int... ind)

Gets the intersection of the generated values of wrapped constraints.

Specified by:

generate in interface Constraint

Overrides:

generate in class ConstraintAdapter

Parameters:

match - current pattern match

ind - mapped indices

Returns:

intersection of the generated values of wrapped constraints