org.biopax.paxtools.pattern.constraint

Class OtherSide

java.lang.Object

org.biopax.paxtools.pattern.constraint.ConstraintAdapter

org.biopax.paxtools.pattern.constraint.OtherSide

All Implemented Interfaces:

Constraint

Deprecated.

public class OtherSide
extends ConstraintAdapter

Given Conversion and its one of the participants (at the left or right), traverses to the other participants that are at the other side. var0 is a PE (PE1) var1 is a Conv var2 is a PE (PE2) Prerequisite: PE1 is either at left or right of Conv

Author:

Ozgun Babur

See Also:

ConversionSide

Field Summary

Fields inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

blacklist, size

Constructor Summary

Constructors

Constructor and Description
OtherSide() Deprecated. Constructor.

Method Summary

Modifier and Type	Method and Description
boolean	canGenerate() Deprecated. This is a generative constraint.
Collection<BioPAXElement>	generate(Match match, int... ind) Deprecated. Checks which side is the first PhysicalEntity, and gathers participants on the other side.

Methods inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

assertIndLength, convertStepDirection, findDirectionInCatalysis, findDirectionInPathways, getCatalysisDirection, getControlChain, getConvParticipants, getDirection, getDirection, getDirection, getDirection, getVariableSize, satisfies, setSize

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OtherSide

public OtherSide()

Deprecated.

Constructor.

Method Detail

canGenerate

public boolean canGenerate()

Deprecated.

This is a generative constraint.

Specified by:

canGenerate in interface Constraint

Overrides:

canGenerate in class ConstraintAdapter

Returns:

true

generate

public Collection<BioPAXElement> generate(Match match,
                                          int... ind)

Deprecated.

Checks which side is the first PhysicalEntity, and gathers participants on the other side.

Specified by:

generate in interface Constraint

Overrides:

generate in class ConstraintAdapter

Parameters:

match - current pattern match

ind - mapped indices

Returns:

participants at the other side